| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4481 |
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| Symbol | |
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| ID | 5192389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5005194 |
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| End bp | 5006495 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588956 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001269785 |
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| Protein GI | 148549683 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.518935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGCG ACACGTCGCC CGACCTTCAC TACCTGAGCG GCTTCGGCAA CGAATTCGCC
AGCGAAGCAT TGCCCGGGGC GCTGCCTGTC GGGCAGAACT CCCCGCAGAA GGCCCCGTAT
GGCCTGTATG CCGAGCTGCT GTCGGGCACG GCGTTCACCA TGGCCCGCAG CGAGCTGCGC
CGTACCTGGC TGTACCGCAT TCGCCCTTCT GCCTTGCACC CACGCTTCGA GCGCTTGGCG
CGCCAGCCGC TCGGCGGGCC ACTGGGTGGC ATCAACCCCA ACCGCCTGCG CTGGAGCCCG
CAGCCGATTC CTGCTGAACC GACCGATTTC ATCGAAGGTT GGCTGCCCAT GGCTGCCAAC
GCCGCAGCGG AAAAACCGGC TGGCGTGAGC ATCTACATCT ACTGCGCCAA CCGGTCCATG
GAACGGGTGT TCTTCAACGC TGACGGTGAG CTACTGCTGG TGCCGGAACA GGGCCGCCTG
CGCATCGCCA CCGAACTGGG CGTGATGGAG GTCGAACCGC TGGAAATTGC GGTGATCCCA
CGTGGCATGA AGTTCCGCGT CGAATTGCTC GACGGCCAGG CCCGTGGCTA CATCGCGGAA
AACCACGGTG CGCCGCTGCG CCTGCCGGAC CTGGGCCCGA TCGGCAGCAA CGGGCTGGCC
AACCCCCGCG ACTTCCTCAC GCCTGTGGCC CACTACGAAG AAGCCGAAGG CCCGGTGCAA
CTGGTACAGA AGTTCCTGGG TGAGCACTGG GCCTGCGAGC TGCAGCACTC GCCACTGGAC
GTTGTGGCCT GGCATGGCAG CAACGTGCCG TACAAGTATG ACCTGCGCCG CTTCAACACC
ATCGGCACCG TCAGCTTCGA CCACCCGGAC CCCTCGATTT TCACCGTGCT CACCTCGCCA
ACCAGCGTGC ATGGCATGGC CAACATGGAC TTCGTGATTT TCCCGCCACG CTGGATGGTG
GCCGAGAACA CCTTCCGTCC GCCATGGTTC CACCGCAACC TGATGAACGA GTTCATGGGC
CTGATCAATG GCGCCTACGA CGCCAAGGCC GAGGGCTTCC TGCCGGGTGG TGCCTCGTTG
CACGGGGTGA TGAGTGCCCA TGGCCCCGAC GCTGAAACCT GTGAAAAGGC CATTGCCGCT
GACCTGGCAC CGCACAAGAT CGACAACACC ATGGCCTTCA TGTTCGAGAC CAGCCAGGTG
TTGCGCCCGA GCCTGCAAGC CCTTGAATGC CCGCAATTGC AGGCCGACTA CGATAGTTGC
TGGGCGACCT TGCCGAGCAC CTTCAACCCG AACCGGAGAT AA
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| Protein sequence | MNRDTSPDLH YLSGFGNEFA SEALPGALPV GQNSPQKAPY GLYAELLSGT AFTMARSELR
RTWLYRIRPS ALHPRFERLA RQPLGGPLGG INPNRLRWSP QPIPAEPTDF IEGWLPMAAN
AAAEKPAGVS IYIYCANRSM ERVFFNADGE LLLVPEQGRL RIATELGVME VEPLEIAVIP
RGMKFRVELL DGQARGYIAE NHGAPLRLPD LGPIGSNGLA NPRDFLTPVA HYEEAEGPVQ
LVQKFLGEHW ACELQHSPLD VVAWHGSNVP YKYDLRRFNT IGTVSFDHPD PSIFTVLTSP
TSVHGMANMD FVIFPPRWMV AENTFRPPWF HRNLMNEFMG LINGAYDAKA EGFLPGGASL
HGVMSAHGPD AETCEKAIAA DLAPHKIDNT MAFMFETSQV LRPSLQALEC PQLQADYDSC
WATLPSTFNP NRR
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