Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4460 |
Symbol | |
ID | 5190560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4985836 |
End bp | 4987365 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640588935 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001269764 |
Protein GI | 148549662 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCGTC GCATCATCAG AACGCTCAAG GCGTTCAGTG CCTGTGCCCT TGCCCTCACC TTGAGCGGCT GTATCGGAAC CTGGGGCATT GCCCCGCAAA GCAAGACGCT GCAAGCCAAT ACCTTGACCA CCGACGCGGC CATTCGCGAA GCCGCGACCG ACGCTCACTG GCCCGACCAG CAGTGGTGGC ACGCCTATGG TGACCCACAG CTGGACCGCT GGGTTACCCT GGCCGTGGCC GGTAGCCCAA GCCTGGCCAT GGCCGCAGCG CGGGTGCGCG AAGCCAAGGC CATGGCCGGT GTGGTCGAGT CGGCGGAAAA GCTCCAGGCC AACGGCCAGG CCACGCTCAA GCGCCACAAC TGGCCTGAAG ACCAGTTTTA TGGCCCCGGC GCGTTGTCGG GTGCCAACAC CTGGGACAAC AACGCCGCCA TCGGTTTCAG CTACGCCCTT GACCTGTGGG GGCGCGAGCG CAATGCCAGC GAGCAGGCCG TGGACCAGGC GCACATGAGC GTGGCCGAAG CCCGTCAGGC GCAGCTGGAA CTGCAGAACA ATGTGGTGCG TGCCTACATC CAGCTGAGCC TGCATTTTGC CCAGCGCGAT ATCGTCAAGG CCGAACTGGA ACAGCAGGAG CAGATCCTGG CCCTGGCCAA GCGTCGCCTG GATGCCGGTA TCGGCACCCA TTTCGAAGTC AGCCAGGCCG AAGCGCCGCT GCCGGAAACC CACCGCCAGC TCGACAGCCT CGACGAAGAA ATTGCCCTGA CCCGCAACCA GCTGGCCGCA CTGGCCGGCA AGGGGCCGGG GGAAGGCGCG CAGTTGCAGC GCCCGGTCTT GGCCTTGGCC GCGCCGCTGA AACTGCCTTC GAACCTGCCC GCCGAACTGG TTGGCCAGCG GCCTGATGTG GTTGCCAGCC GCTGGCAGGT GGCTGCCCAG GCGCGTGGCA TCGACGTCGC TCACGCCGGC TTCTTCCCCA ACGTCGACCT GGTCGGCAGC CTGGGCTTCA TGGCCACCGG CGGTGGCCCG CTGGAATTCC TGACCGGGCG CAAGTTCAAC TACAACGTCG GCCCGGCCAT CAGCTTGCCG ATCTTTGACG GTGGGCGCCT GCGCTCAGAA CTGGGCGTGG CCTCGGCGGG GTATGACGTG GCGGTGGCCC GCTACAACCA GACCGTGGTT GGTGCACTGA AGAACATCTC CGACCAGTTG ATCCGCCGCG AGTCGATGAA AGAACAGTCG CACTTCGCCG CCGAATCGGT TGCTGCCGCG CAGAAAACCT ACGACATCGC CATGGTCGCG TTCCAGCGCG GCCTTACCGA CTACCTGAAC GTGCTCAACG CGCAGACTTT GCTGTTCCGC CAGCAGCAGG TGCAGCAGCA GGTGCAGGCC GCCCGCCTGA TTGCCCATGC CGAGCTGGTC ACCGCCCTGG GTGGTGGCCT GCAGGCCGGT CAGGATGCGC CGAAAGAGGA ACGCCAGGCA GCACCGAAGA CCCCGGCCAC CCTGGCCATT TTCGACAAGA AGCCGGATAA CGCCGAATGA
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Protein sequence | MPRRIIRTLK AFSACALALT LSGCIGTWGI APQSKTLQAN TLTTDAAIRE AATDAHWPDQ QWWHAYGDPQ LDRWVTLAVA GSPSLAMAAA RVREAKAMAG VVESAEKLQA NGQATLKRHN WPEDQFYGPG ALSGANTWDN NAAIGFSYAL DLWGRERNAS EQAVDQAHMS VAEARQAQLE LQNNVVRAYI QLSLHFAQRD IVKAELEQQE QILALAKRRL DAGIGTHFEV SQAEAPLPET HRQLDSLDEE IALTRNQLAA LAGKGPGEGA QLQRPVLALA APLKLPSNLP AELVGQRPDV VASRWQVAAQ ARGIDVAHAG FFPNVDLVGS LGFMATGGGP LEFLTGRKFN YNVGPAISLP IFDGGRLRSE LGVASAGYDV AVARYNQTVV GALKNISDQL IRRESMKEQS HFAAESVAAA QKTYDIAMVA FQRGLTDYLN VLNAQTLLFR QQQVQQQVQA ARLIAHAELV TALGGGLQAG QDAPKEERQA APKTPATLAI FDKKPDNAE
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