| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4336 |
|---|
| Symbol | |
|---|
| ID | 5194945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4848148 |
|---|
| End bp | 4848780 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640588813 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001269643 |
|---|
| Protein GI | 148549541 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.426629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCGTC GAACCAAAGA AGAAGCCCAG GAAACCCGTG CCCAGATCAT CGAGGCGGCG
GAAAGGGCCT TCTACAAGCG CGGGGTTGCG CGAACCACCC TGGCCGACAT CGCCGAACTG
GCGGGTGTGA CACGGGGGGC GATCTACTGG CACTTCAACA ACAAGGCCGA GCTGGTGCAG
GCGTTGCTCG ACAGCCTGCG CGAGACCCAT GACCATTTGG CGCGCGCGAG CGAAAGCGAG
GATGAACTCG ACCCGCTTGG CTGCATGCGC AAGCTGCTGT TGCAAGTGTT CAACGAGCTG
GTGCTCGATG CCCGAACCCG TCGTATCAAT GAAATCCTGC ATCACAAGTG CGAGTTCACC
GATGACATGT GTGAAATTCG CCAGCAGCGC CAGAGTGCGG TGCTGGATTG CCACAAGGGC
ATCACCCTGG CGCTGGCCAA TGCCGTACGC CGGGGCCAGT TGCCTGGCGA GCTGGATGTC
GAGCGCGCGG CGGTGGCCAT GTTTGCCTAT GTCGATGGCC TGATCGGGCG CTGGCTATTG
CTGCCTGACA GTGTCGATCT GTTGGGTGAT GTCGAAAAAT GGGTCGACAC CGGGCTGGAT
ATGCTGCGCT TGAGCCCGGC TCTGCGCAAA TGA
|
|---|
| Protein sequence | MVRRTKEEAQ ETRAQIIEAA ERAFYKRGVA RTTLADIAEL AGVTRGAIYW HFNNKAELVQ
ALLDSLRETH DHLARASESE DELDPLGCMR KLLLQVFNEL VLDARTRRIN EILHHKCEFT
DDMCEIRQQR QSAVLDCHKG ITLALANAVR RGQLPGELDV ERAAVAMFAY VDGLIGRWLL
LPDSVDLLGD VEKWVDTGLD MLRLSPALRK
|
|---|
| |