| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4313 |
|---|
| Symbol | |
|---|
| ID | 5192794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4823042 |
|---|
| End bp | 4823740 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640588790 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001269621 |
|---|
| Protein GI | 148549519 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.141512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTG ACCGTTTCCT CGCCAACCTG CCCAGCTACA ACCGCCAGCA AGTTCGCCTG
ATGCTGGCGC AACGCCGCGT GCGGGTGGAC GGCAAGGTCG CCAGTGACCC GCTGACCGAC
GTGCGTGAAT TCAGCCGCGT AGAGCTGGAC GAGCAACTGC TGCAGGCCGG CCGGCCGGCC
CGCTACCTGA TGCTGTACAA GCCCACTGGC TGCGTAAGCG CCACCCACGA TCCGCAACAC
CGTACCGTTC TCGACCTGCT GCCCACGGCG TTGCGAGATG ACCTGCACAT AGCCGGGCGC
CTGGATTTCA ACACCACCGG CCTGATGATC CTGACCAACG ATGGCCAGTG GTCACGGCGC
CTGACCCAGC CTGCCACAAA GCTGCCCAAG CATTATCTGG TGGACACCGA GGACGAGATT
GGCGAGCACT ATGTGGCCAA GTTTCGCGAG GGTTTCTATT TTGCCTTCGA AGACCTCACC
ACCCAACCAG CCCAGCTGGA CATCCTCGGC CCCCACCGAG CCCGGCTGGC GATCGTCGAG
GGGCGGTACC ACCAGGTCAA GCGCATGTTC GGGCACTTCA ACAACAAGGT GGTGGGGCTG
CATCGGGAGA GCATGGGAGC GATCCGGCTG GATCCGGGGT TGGCGCCGGG GGAGTATCGT
GAACTGACGG CCAATGAGAT AGCCACTGTC CAGGCCTGA
|
|---|
| Protein sequence | MRLDRFLANL PSYNRQQVRL MLAQRRVRVD GKVASDPLTD VREFSRVELD EQLLQAGRPA
RYLMLYKPTG CVSATHDPQH RTVLDLLPTA LRDDLHIAGR LDFNTTGLMI LTNDGQWSRR
LTQPATKLPK HYLVDTEDEI GEHYVAKFRE GFYFAFEDLT TQPAQLDILG PHRARLAIVE
GRYHQVKRMF GHFNNKVVGL HRESMGAIRL DPGLAPGEYR ELTANEIATV QA
|
|---|
| |