Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4302 |
Symbol | |
ID | 5193423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4811377 |
End bp | 4812666 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640588779 |
Product | outer membrane porin |
Protein accession | YP_001269610 |
Protein GI | 148549508 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.188975 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTCAT TGCAGCCGCA GGCGTTCGCG CCTACCCGTT CCTTTGCCGC ACGCCCCTCA GCCATCGCCA GCGCCCTCGC GCTTGCCGGT GTCGCCCCGA TGAGCCAGGC CGCCTTCTTC GAAGACAGCA CGGCCACCTT CGAAACCCGC AACATGTACT TCAACCGCGA CTTCCGCGAC GGCACCAGCG CGCAGCAATC CAAGCGCGAT GAATGGGCCC AGGGCTTCAT CCTCAATTTC GAGTCTGGCT ACACCGATGG CACCGTGGGC TTTGGCCTGG ACGCATTGGG CATGCTCGGC ATCAAGCTCG ACTCCAGCCC CGACCGTACC GACAGCGGCC TGCTGCCGAC CCACGATGAC GGCAAGGCTG CCGACGAATA CTCCAAGCTG GGCCTGACCG GCAAGGTGAA GATCTCCCAG ACTGAACTCA AGATCGGCAC CCTGATTCCC GAGCTGCCGA CCCTGCAGCC CAACGACGGG CGTATCCTGC CGCAAACCTT CGAGGGCGGC CTGCTCACCT CCAAAGAGAT CAAGGGCCTG ACCTTCACCG GTGGCCGCCT GGACAAGGCC AAGGACCGCA ACGACACCAA CTGGGAAGAC CTGGCGCTGA ACAACAAGAA CGGCCGCTTC GGTGGCAGCT TCAGCGCTGA CAACCTGGCC CTGGGCGGGC TCGACTACCA GTTCACCGAC CGCATCACCG GCAGCTACCA CTTCGCCCAG CTCGACGATA TTTACCGCCA GCACTTCATC GGCATGGTCG CCACCCAGCC ATGGGGCCCG GGCACCTTGG GTGCCGACCT GCGCCTTGCC ATCAGCGACG ACGCCGGTGC AGCCAAGGCC GGCAACATCG ACAACACCAC CGTCAACGGC ATGCTCAGCT ATGCCCTGGG CGGGCACAAG GTCAGCGCCG CCTGGCAGCA GCTGTCTGGC GAAAGTGCCT TCCCGTATGT GGATGGCGCC GACCCGTACC TGGTCAACTT CGTCCAGATC AACGACTTCG CCGGTGCCGA CGAACGCTCC TGGCAGGCGC GCTACGACTA CAACTTCGCC GCGCTCGGCG TACCGGGCCT GACCTTCATG ACCCGTTACA TCAGCGGTGA CAACGTCAGC CGTGCTGCCG GTGGCGAAGG CAAAGAGTGG GAACGCAACA CCGAACTGAA GTACGTGGTA CAAAGCGGCC CGTTGAAGAA CGTCGCCGTG CGCCTGCGCA ACGCCACCTT CCGCTCCAAC TTCGCCCGTG ACGCGGATGA AGTGAGGCTG TTGGTCAGCT ACAGCGTGGC GCTGTGGTAA
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Protein sequence | MLSLQPQAFA PTRSFAARPS AIASALALAG VAPMSQAAFF EDSTATFETR NMYFNRDFRD GTSAQQSKRD EWAQGFILNF ESGYTDGTVG FGLDALGMLG IKLDSSPDRT DSGLLPTHDD GKAADEYSKL GLTGKVKISQ TELKIGTLIP ELPTLQPNDG RILPQTFEGG LLTSKEIKGL TFTGGRLDKA KDRNDTNWED LALNNKNGRF GGSFSADNLA LGGLDYQFTD RITGSYHFAQ LDDIYRQHFI GMVATQPWGP GTLGADLRLA ISDDAGAAKA GNIDNTTVNG MLSYALGGHK VSAAWQQLSG ESAFPYVDGA DPYLVNFVQI NDFAGADERS WQARYDYNFA ALGVPGLTFM TRYISGDNVS RAAGGEGKEW ERNTELKYVV QSGPLKNVAV RLRNATFRSN FARDADEVRL LVSYSVALW
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