| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4180 |
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| Symbol | |
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| ID | 5192755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4679493 |
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| End bp | 4680695 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588657 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_001269488 |
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| Protein GI | 148549386 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.374463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGTGTG ATGTGAGTCG CCCGCAGCGT ATTACCGTGC TCGGGGCCAC CGGCTCCATT
GGCCTGAGCA CGCTGGATGT GATTGCGCGC CATCCTGACC GTTATCAAGC GTTTGCCCTC
ACGGGCTATT CGCGCATCGA CGAGCTGTTG GCCTTATGTG TGCGTCATCG CCCGGCATTC
GCTGTGGTGC CGAGCACTGA GGCGGCGGTG AGGTTGCGTG CGGGTCTGGC TGCGGCCGGC
TGCACCACCG AGGTGCTGGA AGGTGAGGCC GGGCTTTGTC AGGTGGCGTC GGCCGCTGAA
GTGGATGCAG TGATGGCAGC CATTGTCGGT GCTGCCGGCC TGCGGCCCAC GCTGGCAGCG
GTCGAGGCCG GCAAGAAGGT GTTGCTGGCC AACAAGGAAG CACTGGTGAT GTCGGGCGCA
CTGTTCATGG AGGCGGTGCG GCAAAAAGGG GCCGTGCTGC TGCCGATCGA CAGCGAACAC
AACGCTATCT TCCAGTGCAT GCCAGGCGAC TACGCCCGTG GTCTGAGTGC CGTCGGTGTG
CGCCGGATCC TGCTTACCGC GTCCGGCGGG CCGTTCCGCG AAACGCCGGT CGAGGCGCTG
CTGGACGTGA CCCCGGAGCA AGCCTGTGCG CACCCTAACT GGTCCATGGG GCGCAAGATT
TCCGTGGATT CGGCCAGCAT GATGAACAAA GGCCTCGAGT TGATCGAAGC CTGCTGGTTG
TTCGATGCCG TGCCGTCCAA GGTTGAGGTG GTGGTGCACC CGCAGAGTGT AATCCACTCG
CTGGTCGACT ACGTGGACGG ATCGGTACTC GCGCAGTTGG GCAACCCGGA CATGCGTACG
CCGATCGCCA ACGCGTTGGC CTGGCCGGAA CGGATCGATT CCGGGGTTGC CCCTCTGGAC
CTGTTCGCCA TCGCCCGTCT GGATTTTCAG GCGCCCGACG AACAACGCTT CCCTTGCCTG
CGCCTTGCGC GGCAGGCTGC CGAGGCCGGC AACAGCGCGC CTGCCGTGCT CAATGCAGCC
AACGAGGTTG CGGTCGAGGC ATTTCTTGAA CGGCGCATCC GCTTCCCGGA GATCGCGGGT
ATGATCGAAC AGGTACTCGA CCAGGAACCG GTCGTGCCGC TGCCGTCGCT GGATGCGGTA
TTTGCCGCCG ATCAGCGTGC CCGGGAGCTT TCCCGTGAGT GGCTGAGGCG TCACGGCCGC
TGA
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| Protein sequence | MGCDVSRPQR ITVLGATGSI GLSTLDVIAR HPDRYQAFAL TGYSRIDELL ALCVRHRPAF
AVVPSTEAAV RLRAGLAAAG CTTEVLEGEA GLCQVASAAE VDAVMAAIVG AAGLRPTLAA
VEAGKKVLLA NKEALVMSGA LFMEAVRQKG AVLLPIDSEH NAIFQCMPGD YARGLSAVGV
RRILLTASGG PFRETPVEAL LDVTPEQACA HPNWSMGRKI SVDSASMMNK GLELIEACWL
FDAVPSKVEV VVHPQSVIHS LVDYVDGSVL AQLGNPDMRT PIANALAWPE RIDSGVAPLD
LFAIARLDFQ APDEQRFPCL RLARQAAEAG NSAPAVLNAA NEVAVEAFLE RRIRFPEIAG
MIEQVLDQEP VVPLPSLDAV FAADQRAREL SREWLRRHGR
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