| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4179 |
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| Symbol | |
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| ID | 5192754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4678068 |
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| End bp | 4679420 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588656 |
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| Product | putative membrane-associated zinc metalloprotease |
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| Protein accession | YP_001269487 |
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| Protein GI | 148549385 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.374735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCGC TCTACATGAT TATCGGCACC CTCGTGGCGT TGGGTGTGTT GGTCACTTTC
CACGAATTCG GTCACTTCTG GGTGGCGCGC CGCTGCGGCG TCAAGGTGCT GCGTTTCTCG
GTGGGTTTCG GCACGCCGCT GCTGCGGTGG CATGATCGCC ACGGCACCGA GTTCGTTGTT
GCGGCCATTC CTCTGGGTGG CTACGTCAAG ATGCTCGACG AGCGTGAAGG CGATGTGCCG
CCGGCGCTGG CCGGGCAGTC GTTCAACCGC AAGTCGGTGC GCCAGCGTAT TGCGATTGTC
GCGGCAGGCC CGATCGCCAA TTTTCTGCTG GCTATCCTGT TTTTCTGGGT GCTGGCGATG
CTGGGTACCC AGCAAATCCG CCCGGTTATC GGCGCGGTCG ACAGTGGCAG CCTGGCAGCA
TCTGCAGGGC TGACCGCAGG TCAGGAAATC GTTTCTGTAG ATGGCAAGCC GACCAACGGT
TGGTCGGCGG TCAATTTGCA GCTGGTTCGT CGTCTGGGCG AGAGCGGTAC CTTGCAGATT
GGCGTGCGCG ATGAGGGCGC CAGCGCCGAG CGTCAGTTGC AGGTCAAGCT GGACAATTGG
CTCAAGGGCG CCGACGAGCC GGACCCGATT CAATCCCTGG GGCTGCGCCC TTGGCGACCG
GCGATCACAC CTGTGCTGGC CGAGATCGAT CCGAAGGGGC CGGCTGCCGC TGCGGGCCTG
AAAACCGGTG ACAAGCTGCT GGCTCTGGAC GATGTGGCAG TGACTGAATG GCAGCAGGTT
GTCGACCGCG TGCGCGCCCG TCCGGATGCC AGGGTAGTGG TGCGAGTGGA GCGCGATGGC
GCTGCCCTGG AGCTGCCGGT GACCTTGGCC CGCAAGGGGG AGGGCAAGGC CGTCGGTGGC
TATCTTGGCG CTGGCGTCAA AGGTGGCGAA TGGCCTGCCA ACATGCTCCG CGAAATCAGC
TACGGCCCGC TGGATGCGGT GGGTGAGAGC TTGTCGCGTA CCTGGAACAT GAGCGTCCTG
ACCCTTGAAT CGCTGAAGAA AATGCTGTTC GGGGAGCTCT CGGTAAAAAA CTTGAGTGGA
CCGATAACCA TTGCTAAAGT GGCGGGCGCT TCAGCCCAGT CCGGCGTGGG GGATTTCCTG
AATTTCCTGG CCTACCTGAG CATAAGCCTG GGGGTTCTTA ACCTGCTGCC CATTCCAGTA
CTGGACGGGG GGCATTTGCT GTTTTACCTG GTCGAGTGGG CGCGCGGTCG TCCGCTGTCG
GATCGGGTGC AAGGTTGGGG GGTTCAGATC GGTATCAGTT TGGTCATAGG GGTGATGTTG
CTCGCCCTGA TCAACGATCT GGGTCGACTA TAA
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| Protein sequence | MTALYMIIGT LVALGVLVTF HEFGHFWVAR RCGVKVLRFS VGFGTPLLRW HDRHGTEFVV
AAIPLGGYVK MLDEREGDVP PALAGQSFNR KSVRQRIAIV AAGPIANFLL AILFFWVLAM
LGTQQIRPVI GAVDSGSLAA SAGLTAGQEI VSVDGKPTNG WSAVNLQLVR RLGESGTLQI
GVRDEGASAE RQLQVKLDNW LKGADEPDPI QSLGLRPWRP AITPVLAEID PKGPAAAAGL
KTGDKLLALD DVAVTEWQQV VDRVRARPDA RVVVRVERDG AALELPVTLA RKGEGKAVGG
YLGAGVKGGE WPANMLREIS YGPLDAVGES LSRTWNMSVL TLESLKKMLF GELSVKNLSG
PITIAKVAGA SAQSGVGDFL NFLAYLSISL GVLNLLPIPV LDGGHLLFYL VEWARGRPLS
DRVQGWGVQI GISLVIGVML LALINDLGRL
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