| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4171 |
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| Symbol | dnaE |
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| ID | 5192776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4667236 |
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| End bp | 4670760 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588648 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001269479 |
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| Protein GI | 148549377 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGTTC CCTTCGTTCA CCTGCGCGTC CACTCCGAAT TCTCGCTGGT CGACGGCCTG
GTGCGGATCA AGCCGCTGGC CAAGGCGCTG ACCGGGATGA ACATGCCGGC GGTCGCGATC
ACCGATCAGA GCAACATGTG CTCGCTGGTG AAGTTCTACA AGACGGCCAT GGGCGCCGGC
ATCAAGCCGA TCTGCGGTGC CGACCTGTGG CTGGCCGGTG CCGACCCGGA AGCCCCGCTG
TCGCGCATCT GCTTCCTGGC CATGAACCCC AAGGGCTATC GCAACCTCAC CGAACTGATC
TCGCGCGGCT GGACCGATGG CCAGCGCAAT GGCCTGGTCA TCCTCCAGCG TGAATGGATC
GCCCCGGCCA GCGAGGGCCT GATTGCCTTG TCCGCGGGCA AGGAAGGCGA CATTGGCATG
GCGCTGCTGG CGGGTCGGCA AGACGAAGCC GAAGCGCTTC TTCAGGACTG GATGGGCATG
TTCCCCGAGC GCTTCTACGT TGAAGTGCAG CGCACCAATC GCGCACGCGA CGAAGAATAC
GTGCACGCGG CGGTGGCATT GGCCGACAAG CTTGGCGCCC CGCTGGTGGC TACCAACGAC
GTACGTTTCA TCAAACAGGC GGATTTCGAC GCCCACGAAA CCCGCGTCTG TATCGGTGAG
GGCTGGACCC TCGATGACCC GCGCCGCCCG CGTTGCTACA GCGACCAGCA GTACCTGAAG
TCGGCGGAGG AAATGGCCGA GCTCTTCAGC GACCTGCCCG ACGCCATCGC CAACACCGTC
GAAATTGCCA AGCGCTGCAA CATCCAGGTA CAGCTGGGCA AGTACTTCCT GCCTGACTTC
CCCACGCCCA ATGGCATGGG CATCGATGAC TACCTGCGGC ATGTGTCCCA CGAAGGCCTG
GAAGAGCGCC TGGCCGTGTT GTGGCCGAAA GAGACGACGC CCAATTATGA AGAAAAGCGT
CAGGTTTACC TGGACCGCCT GAAGTTCGAA CTGGACATCA TCATCCAGAT GGGCTTCCCC
GGTTACTTCC TGATTGTTAT GGACTTCATC AAGTGGGCCA AGAACAACGA CGTACCGGTG
GGCCCGGGTC GTGGTTCGGG TGCCGGCTCG CTGGTGGCCT ATGTCCTGAA GATCACCGAT
CTCGACCCGC TGGCCTACGA CCTGCTGTTC GAGCGCTTCC TCAACCCTGA ACGTGTTTCC
ATGCCCGACT TCGACGTCGA CTTCTGCATG GACGGCCGTG ACCGGGTGAT CGACTACGTG
GCCGAGGCCT ACGGCCGTAA CGCGGTGAGC CAGATCATCA CCTTCGGTAC CATGGCCGCC
AAGGCGGTGG TGCGTGACGT GGCGCGGGTG CAAGGCAAAT CCTATGGCCT GGCCGACCGC
CTGTCGAAGA TGATCCCCTT CGAAGTGGGC ATGACCCTGG AGAAGGCCTA CGAGCAGGAA
GAAATCCTGC GTGACTTCCT CAAGGGCGAC GAAGACGCCC GTGAAATCTG GGACATGGCC
CTGAAGCTGG AGGGTGTGAC CCGGGGTACC GGCAAGCACG CCGGTGGTGT GGTTATTGCA
CCGACCAAGC TCACCGACTT TTCGCCGATC GCCTGTGATG AAGAGGGTGG TGGCCTGGTA
ACCCAGTTCG ACAAGGATGA CGTCGAGGCC GCCGGCCTGG TGAAGTTCGA CTTCCTCGGC
CTGCGTACCT TGACCATCAT CAAGTGGGCG ATGGAGATCA TCAACCGCGA GCAGGCCAAG
AAGAACCTGC CCGACCTCAA CATCGACTTC ATCCCGCTGG ACGACCGCAA GACCTACGAG
CTGCTGCAGA AGGCCGAAAC CACGGCGGTG TTCCAGCTTG AATCGCGCGG CATGAAGGAG
CTGATCAAGA AGCTCAAGCC CGACTGCCTG GAAGACCTGA TCGCACTGGT TGCGCTGTTC
CGTCCGGGCC CGCTGCAATC GGGCATGGTG GACGACTTCA TCAACCGCAA GCACGGCCGC
GCCGAGCTGG CCTACCCGCA CTCCGACTAC CAGTACGAAG GCCTCAAGCC GGTACTGGCG
CCGACCTACG GCATCATCCT GTACCAGGAA CAGGTGATGC AGATCGCCCA GGTGATGGCG
GGTTACACCC TGGGTGGCGC CGACATGCTG CGCCGGGCGA TGGGTAAGAA AAAGCCCGAG
GAAATGGCCA AGCAGCGCGG TGGTTTCATC GAAGGTTGCG TAGCCAACAA TATCGATGCG
GACCTCGCCG GTAACATCTT CGACCTGGTA GAGAAGTTCG CGGGCTACGG ATTCAACAAA
TCCCACTCCG CCGCCTATGG CCTGGTGTCG TACCAGACCG CCTGGCTGAA AACCCACTAC
CCGGCGCCGT TCATGGCCGC GGTCCTGTCG GCGGATATGC ACAACACCGA CAAGGTGGTG
GTGCTGGTGG AGGAGGTGCG CAGCATGAAG CTGCGCCTCG ACGCGCCGGA TGTGAACTTC
TCGGACTTCA AGTTCACCGT CAACAACGAC GGCCGTATCG TCTACGGCCT TGGTGCCATC
AAGGGTGTCG GCGAAGGCCC GGTGGAGGCG ATTGTCGAGG CCCGTGCCCA AGGCGGTCCC
TTCAAGGACC TGTTCGATTT CTGTGAACGC ATCGACCTCA AACGGGTCAA CAAGCGTACC
CTTGATGCGC TGGTGCGCAG TGGCGCGCTG GACCGCCTTG GTCCGCACTT CCATGACGAG
ATCAAGGCCT ACCACGCCAA CATCGACATC AACCGGGCAA CCTTGCTGTC GGCGCTGGGC
GAGGCCATCA AGGCAGCCGA GCAGGCCGCA CACACCGCTG ACAGTGGTCA TGTCGACCTG
TTCGGCAGCA TGTTCGACGC GGCAGATGTC GATGTGTATG CCAACCACCG CAAGGTGCGC
GAGCTCACCC TCAAGGAGCG TCTGAAGGGG GAGAAGGACA CCCTTGGCCT GTACCTCACC
GGCCACCCGA TCGACGAGTA CGAGACCGAG ATCCGTCGCT TCGCCCGCCA GCGCATCGTC
GACCTCAAGC CGTCGCGCGA AACCCAGACC ATCGCGGGCA TGATCATTGC GCTGCGGGTG
ATGAAGAACA AGAAGGGCGA CAAGATGGGC TTCGTCACCC TGGATGACCG TTCCGGGCGG
ATCGAGGCAT CGCTGTTTGC CGATGCCTTC ATGGCGGCAC AGTCCTTGCT GCAGACCGAT
GCGATGGTGG TGGTGGAAGG CGAGGTCAGC AATGACGACT TCTCCGGGGG CTTGCGCCTG
CGGGTGAAGC AGGTGATGAC CATGGAAGAC GCACGCACCA AGCTGGCCGA GAGCCTGCGC
CTGAAGGTGG CGCACGACGC ACTGAAGGGC GACCGGCTGA AGTGGCTGGG TGAGCTGATC
ACCCGCCATC GCGGTGCTTG CCCGATCACG CTGGAGTACA CCGGCAGCGA CGCCAAGGCC
ATGCTGCAGT TTGGCGAGCA GTGGGCGATC GACCCGGCCG ATGGGCTGAT TCAGGCGCTG
CGTGACCAGT TCGGGCGTGA GAACGTCTTC CTGCAATATC GTTGA
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| Protein sequence | MSVPFVHLRV HSEFSLVDGL VRIKPLAKAL TGMNMPAVAI TDQSNMCSLV KFYKTAMGAG
IKPICGADLW LAGADPEAPL SRICFLAMNP KGYRNLTELI SRGWTDGQRN GLVILQREWI
APASEGLIAL SAGKEGDIGM ALLAGRQDEA EALLQDWMGM FPERFYVEVQ RTNRARDEEY
VHAAVALADK LGAPLVATND VRFIKQADFD AHETRVCIGE GWTLDDPRRP RCYSDQQYLK
SAEEMAELFS DLPDAIANTV EIAKRCNIQV QLGKYFLPDF PTPNGMGIDD YLRHVSHEGL
EERLAVLWPK ETTPNYEEKR QVYLDRLKFE LDIIIQMGFP GYFLIVMDFI KWAKNNDVPV
GPGRGSGAGS LVAYVLKITD LDPLAYDLLF ERFLNPERVS MPDFDVDFCM DGRDRVIDYV
AEAYGRNAVS QIITFGTMAA KAVVRDVARV QGKSYGLADR LSKMIPFEVG MTLEKAYEQE
EILRDFLKGD EDAREIWDMA LKLEGVTRGT GKHAGGVVIA PTKLTDFSPI ACDEEGGGLV
TQFDKDDVEA AGLVKFDFLG LRTLTIIKWA MEIINREQAK KNLPDLNIDF IPLDDRKTYE
LLQKAETTAV FQLESRGMKE LIKKLKPDCL EDLIALVALF RPGPLQSGMV DDFINRKHGR
AELAYPHSDY QYEGLKPVLA PTYGIILYQE QVMQIAQVMA GYTLGGADML RRAMGKKKPE
EMAKQRGGFI EGCVANNIDA DLAGNIFDLV EKFAGYGFNK SHSAAYGLVS YQTAWLKTHY
PAPFMAAVLS ADMHNTDKVV VLVEEVRSMK LRLDAPDVNF SDFKFTVNND GRIVYGLGAI
KGVGEGPVEA IVEARAQGGP FKDLFDFCER IDLKRVNKRT LDALVRSGAL DRLGPHFHDE
IKAYHANIDI NRATLLSALG EAIKAAEQAA HTADSGHVDL FGSMFDAADV DVYANHRKVR
ELTLKERLKG EKDTLGLYLT GHPIDEYETE IRRFARQRIV DLKPSRETQT IAGMIIALRV
MKNKKGDKMG FVTLDDRSGR IEASLFADAF MAAQSLLQTD AMVVVEGEVS NDDFSGGLRL
RVKQVMTMED ARTKLAESLR LKVAHDALKG DRLKWLGELI TRHRGACPIT LEYTGSDAKA
MLQFGEQWAI DPADGLIQAL RDQFGRENVF LQYR
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