| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3998 |
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| Symbol | |
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| ID | 5193117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4506747 |
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| End bp | 4507400 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640588471 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001269306 |
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| Protein GI | 148549204 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0560] Phosphoserine phosphatase |
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| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.050869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.239622 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACTGG CAATTTTCGA TCTGGATGAA ACCCTGATCC ACGGCGACTG CGCATCACTG
TGGAGCGAGC AGATGGCCCG GCTGGGCTGG GTCGACGGCA AGGATTTCCT GCGCCGCGAC
CATGAACTGA TGGAAGCCTA TGGCAGGGGC CACCTGCAGA TGGAGGACTA CATGGCCTTC
AGCCTGGAGC CGATTGCCGG GCGTACCCTG GAAGAAGTCG AGCACCTGGT GGCACCGTGG
GTCGAAGAAG TGATCGAACC GATCATCTAC GGTGACGCCT GCCGCTGCAT TGCCGAGCAC
CGCAAGCGTG GGGATCGCAT CCTGATCATT TCCGCTTCGG GTACGCACCT GGTCGGGCCG
ATTGCCGCGA GACTGGGCGT GGATGAATAC CTGGCCATCG AGCTTGAGGC TGTGAACGGG
GTGTACACCG GCAAGACCCA CGGGGTGCTG ACCTATCGTG AGGGCAAGAT CACGCGGTTG
CTGGAATGGC TGGATCAGGA GCAGGAGAAC CTGGAGGGCG CGAGTTTCTA TTCCGATTCG
AGGAATGACT TGCCGTTGTT GTTGAGAGTG GATCACCCGC ATGTGGTGAA CCCGGATGCG
GTGTTGCGCG AGCATGCCGA GATCAATGGG TGGCCGATTC TGAGCTGGAG CTGA
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| Protein sequence | MALAIFDLDE TLIHGDCASL WSEQMARLGW VDGKDFLRRD HELMEAYGRG HLQMEDYMAF
SLEPIAGRTL EEVEHLVAPW VEEVIEPIIY GDACRCIAEH RKRGDRILII SASGTHLVGP
IAARLGVDEY LAIELEAVNG VYTGKTHGVL TYREGKITRL LEWLDQEQEN LEGASFYSDS
RNDLPLLLRV DHPHVVNPDA VLREHAEING WPILSWS
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