| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3968 |
|---|
| Symbol | |
|---|
| ID | 5191935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4477093 |
|---|
| End bp | 4477272 |
|---|
| Gene Length | 180 bp |
|---|
| Protein Length | 59 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640588441 |
|---|
| Product | carbon storage regulator, CsrA |
|---|
| Protein accession | YP_001269276 |
|---|
| Protein GI | 148549174 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
|---|
| TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.934134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.143623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTAA TAGGGCGCGA AGTAGGGGAG GTCATCGTGA TTGGCGATGA CATCCGGATC
ATGGTGGTAG AGACCCGGGA CGGCGTGGTG CGCTTTGGTG TGGCTGCTCC GCGTGAGGTG
CCGGTGCATC GAGCCGAAGT TTACAAGCGC ATCAAGGCGT CCAAGCAGAG CAAGGCCTGA
|
|---|
| Protein sequence | MLVIGREVGE VIVIGDDIRI MVVETRDGVV RFGVAAPREV PVHRAEVYKR IKASKQSKA
|
|---|
| |