| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3950 |
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| Symbol | |
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| ID | 5190575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4454418 |
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| End bp | 4455089 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640588423 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_001269258 |
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| Protein GI | 148549156 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00428214 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0156244 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTGC GAGCAGTACT CTTCGACATG GACGGCACCT TGCTGGACAC GGCGCCGGAC
TTCATCGCCA TTTGCCAGGC CATGCTCGCC GACCGCGGGC TGCCGGCCGT TGACGACAAC
CTGATCCGTG GCGTGATCTC GGGTGGCGCC CGCGCCATGG TCGCCACTGC GTTCGCCATG
GACCCGGAGG CTGACGGCTT CGAGGCCCTG CGCCTGGAGT TCCTCGAGCG TTACCAGCGC
GACTGCGCGG TGCACAGCAA GCTGTTCGAG GGCATGGCCG AGCTGCTGGC CGACATCGAG
AAAGGCAACC TGCTGTGGGG CGTCGTCACC AACAAGCCGG TGCGCTTCGC CGAGCCGATC
ATGCAGCAGC TGGGCCTGGC CGAGCGTTCG GCGTTGCTGA TCTGCCCGGA CCACGTGAAA
AACAGCAAAC CCGACCCCGA GCCGCTGATC CTGGCCTGCA AGACGCTGAA CCTGGACCCG
GCCAGTGTGC TGTTCGTCGG CGACGACCTG CGCGACATCG AGTCCGGCCG CGACGCAGGT
ACCCGCACGG CGGCGGTGCG CTACGGCTAT ATTCATCCAG AGGACAACCC CAACAACTGG
GGTGCCGACG TGGTGGTGGA CCACCCACTG GAACTGCGCA AAGTGATCGA CAGCGCGCTG
TGCGGCTGCT GA
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| Protein sequence | MRLRAVLFDM DGTLLDTAPD FIAICQAMLA DRGLPAVDDN LIRGVISGGA RAMVATAFAM
DPEADGFEAL RLEFLERYQR DCAVHSKLFE GMAELLADIE KGNLLWGVVT NKPVRFAEPI
MQQLGLAERS ALLICPDHVK NSKPDPEPLI LACKTLNLDP ASVLFVGDDL RDIESGRDAG
TRTAAVRYGY IHPEDNPNNW GADVVVDHPL ELRKVIDSAL CGC
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