| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3853 |
|---|
| Symbol | |
|---|
| ID | 5195249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4335000 |
|---|
| End bp | 4335953 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640588325 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001269161 |
|---|
| Protein GI | 148549059 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0876219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.133098 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCG ATACCCTGAC CGACCAATTG AGCCTGTTCC TCGATGTGCT GGAAACCGGC
AGCTTTTCTG CCGCCGCCCG TCGCCACCCG CTGACCCCGT CTGCGGTAGC ACGGCGCATC
GACAACCTGG AAAGCGCCGT CGGCAGCCGC CTGTTCACCC GCAGCACCCA CGCGGTGCGG
GCCACGCCTG CAGGCAACGC CTTTGCCGAG CGGGCCAGGC GCATCATCGA GGAGTTGCGC
CTGGCCCGGG CTGAAGCGGT GTCACTGAGC AATGCCCCGG AAGGCCTGAT CCGCATCGAC
GCCCCTGCCG CGTTTGGCCG CCGCCACCTG GCCCCGGCCA TTGCCGACTT CCTGGTGGCC
TACCCGGGCC TGGACGTGCA ACTGCGGTTG ATCGACAGCT TCGTCGACCT GCAGGGCAGC
CACCTGGGCG AGGTCGACCT GGTGCTGCGC GCCGGCCCCT TGGCCGACAC CCGTCTGGTC
GCCACGCCGC TCGCCTACAT GGTGCGCATT GCCTGCGCCA GCCCCGCCTA CCTGGCCAGC
CGCGGCATCC CCACCTGCCC CAGCGAACTG CCCGGGCATG ACGGGCTGGA CTGGGATGGC
CTGGCGCCGC CGTTCGCCTG GCGCTTCAGT GTGGCCGGGC AAACCCGCCT GTATCGCCCC
GCGCGCATGC GCATGGCCGC CAACAATGCC GAGACCTTGT TGTTCGGCGC CCTCGCCGGC
CTGGGGATAG CCCACCTGCC CACCTGGCTG ATCAGTGAAT ACCTGCTGCG CGGCGAGCTG
ATCCCGTTGT TTTGCGACGG CGGCATGCCT GAAGCCGAGA CCAGCGGCAT TTATGCGCTA
CGCCTGGCAC ATGAAACGAA CTCTCGCAGC CGTTTGCTGC TCGAATTCCT CAAGAGCCGC
TTCAGCCCGA TTCCACCCTG GGACCTGGCC TTGCGCAGTG AACTGCGCGA TTAA
|
|---|
| Protein sequence | MNPDTLTDQL SLFLDVLETG SFSAAARRHP LTPSAVARRI DNLESAVGSR LFTRSTHAVR
ATPAGNAFAE RARRIIEELR LARAEAVSLS NAPEGLIRID APAAFGRRHL APAIADFLVA
YPGLDVQLRL IDSFVDLQGS HLGEVDLVLR AGPLADTRLV ATPLAYMVRI ACASPAYLAS
RGIPTCPSEL PGHDGLDWDG LAPPFAWRFS VAGQTRLYRP ARMRMAANNA ETLLFGALAG
LGIAHLPTWL ISEYLLRGEL IPLFCDGGMP EAETSGIYAL RLAHETNSRS RLLLEFLKSR
FSPIPPWDLA LRSELRD
|
|---|
| |