Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3809 |
Symbol | |
ID | 5190266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4270489 |
End bp | 4273761 |
Gene Length | 3273 bp |
Protein Length | 1090 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640588276 |
Product | ribonuclease |
Protein accession | YP_001269117 |
Protein GI | 148549015 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000518974 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGAA TGCTGATTAA CGCGACTCAA CCCGAAGAGT TGCGTGTAGC CCTGGTGGAC GGCCAACGTC TCTACGACCT GGACATCGAG TCCGGCGCGC GCGAGCAGAA AAAGGCCAAC ATCTACAAAG GCAAGATCAC CCGCATCGAA CCCAGCCTCG AAGCCGCCTT CGTCGACTTC GGTTCCGAAC GTCACGGCTT CCTGCCGCTG AAAGAAATCT CCCGCGAGTA CTTCAAGAAG GCCCCAGAAG GCCGGGTCAA CATCAAGGAA GTGCTCAGCG AAGGCCAGGA AGTCATCGTT CAGGTCGAGA AGGAAGAGCG CGGCAACAAA GGCGCCGCCC TCACCACCTT CATCAGCCTG GCCGGCCGCT ACCTGGTGCT GATGCCCAAC AACCCGCGTG CCGGTGGCAT CTCGCGCCGC ATCGAAGGCG AAGAGCGCAA CGAACTGCGC GAAGCCCTGA ACGGCCTGAC CGTACCGGGT GACATGGGCC TGATCGTGCG CACTGCCGGC CTTGGCCGCA GCAGCGAAGA AATGCAGTGG GACCTGGATT ACCTGCTGCA GCTGTGGACC GCCATCAAGG AAGCGTCCCT GGACCGCGCC GCGCCATTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG CGCCAGGACA TCGGCGAAGT GCTGATCGAC AGCATCGACG CCCAGGAAGA AGCGCTGACC TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTCA AGCTGTACGA AGACAGCGTG CCGCTGTTCA ACCGCTTCCA GATCGAAAGC CAGATCGAGA CCGCCTTCCA GCGCGTGGTC GACCTGCCAT CGGGTGGCTC GATCGTGATC GACCCGACCG AAGCCCTGGT GTCCATCGAC ATCAACTCGG CGCGCGCCAC CAAAGGCAGC GACATCGAAG AAACCGCCCT GCAGACCAAC CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTGCGCCTGC GTGACATCGG CGGCCTGATC GTCATCGACT TCATCGACAT GACCCCGGCG AAGAACCAGC GCGCTGTTGA AGAGCGCGTG CGTGAATGCC TGGAAGCCGA CCGTGCCCGC GTGCAGGTTG GCCGCATCTC GCGCTTCGGC CTGCTGGAAA TGTCCCGTCA GCGCCTGCGC CCATCGCTGG GCGAAAGCAG CGGCATCGTC TGCCCACGCT GCTCCGGCAC CGGCATCATC CGTGACGTCG AATCGCTGTC GCTGGCCATC CTGCGCCTGA TCGAAGAAGA AGCCCTGAAA GACCGCACCG CCGAAGTACG TGCTCAAGTG CCGATCCCGG TAGCCGCTTT CCTGCTGAAC GAAAAGCGTA ACTCGATCAC CAAGATCGAG CTGCGCACCC GTGCGCGCAT CATCATCCTG CCGAACGACC ACCTGGAAAC CCCGCACTTC GAAGTCCAGC GCCTGCGCGA CGACAACCCT GAAGTGCTGA ACAACCAGTC CAGCTACGAA ATCGCCGCCG CCGAAGCTGA AGAAGCGCCG CAGCCGACCG CCACCCGCAC CCTGGTACGC CAGGAAGCCG CAGTGAAGAC GGCCCCGGCC CGCGCCAACG CACCGGTACC GGCCGCCGCT GAAGAGCCCC AGGCTGCCGC GCCGGTCGCC CCTGCCCCGA GCGCTCCGGA GCCAAGCCTG TTCAAAGGCC TGGTGAAGTC GCTGGTGAGC CTGTTCGCCG GCAAGGACGA GCCTGCCGCC GCGCCAGTGG CTCCCGCCGC CGAAAAACCG GCTGCCGAGC GCAGCCCGCG TAACGAAGAA CGCCGCAACG GCCGCCAGCA AAGCCGCAAC CGCAACGGCC GCCGCGACGA AGAACGCAAA CCGCGTGAAG AGCGTGCCGA GCGCGCACCG CGCGAGGAAC GCGCCCCACG CGAAGAACGT GCACCGCGTG AGGAACGTGC ACCGCGTGAA GAACGTGCAC CGCGTGAGGA ACGTGCCCCA CGTGAAGAGC GTGCACCACG TGAAGAGCGT GCACCGCGTG AAGAACGTAC TCCGCGCCAG CCACGCGAAG ACCGCCGTAG CAACCGCGGC GAAGAGCGCG TTCGCGAGCT GCGCGAACCG CTGGACGCCA CCCCGCCAGC CGAACGCGAA GAGCGCCAGC CGCGTGAAGA ACGTGTAGCC CGCGAAGAGC GTGCTCCACG CGAAGAACGC GCACCGCGTG AAGAACGCGC ACCGCGTGAA GAACGTGCTC CACGTGAAGA ACGTGCTCCA CGTGAAGAAC GCGCACCGCG TGAAGAACGT GCTCCACGTG AAGAGCGCGC ACCTCGGGAA GAACGCGCTC CACGCGAAGA ACGCGCCCCG CGCCCACCAC GCGAAGAGCG CCAACCACGC GCTGCCGAAG AAGCAACCGA GCAGGCTGCC GAACTGGCCG AAGAGCAACT GCCAGGCGAA GAGCTGCTGC AAGACGAGCA GGAAGGCACC GATGGCGAGC GCCCACGCCG CCGCTCCCGT GGCCAGCGTC GTCGCAGCAA CCGTCGTGAG CGTCAGCGCA ATGCCAATGG CGAGCTGATC GACGGCAGTG AAGAAGAAGG CAGCGAAGAG CAGCCACAAC AGCACCAGGC CACCGAGCTG GGTGCCGAAC TGGCTGCCGG CCTTGCCGTG ACAGCTGCTG TCGCCAGCAG CAACATCAGC TCCGATGCAG AAGCCCAGGC CAACCAGCAG GCCGAGCGTG CCACCGCCGA AGTCGCTGCC GTTGCAGAAA CCGACAACAG CGAAGCCGCC CAGCCGGTCG AGCAGGCCGA AGTGGTCACC AAAGCTGAAG AAGCGTCCGT GGCCCCAGCG GTCGAGCAGC CGGTCACCGA GCCAGTGGCC GCAGCCGAGG CAACTGCCGA GCCTGTGGTC GAAATGGCCC CGCAGCCTGT CGCTGAAGAT GCACCTGCTG CTGAGCCGGC CGTTGTTGCA GAAACCGTGG TCACTGAAAC CCCAGCAGAA GCCCCAGCGG TAGAAGCCGG TGAGATCGAA CAGGCCCCGG CCGTGGTCGA AGTCGCTCCG GTTGCCGCAC AGCCTGCCCC GGTTGTCGAA GCCCAGCCAG AAGTGGTGGC CGAGCCTGCA CCTGCAGTGG TCGAACCTGC CACTGTCATG CTGGCCAACG GCCGCGCACC GAACGACCCA CGTGAAGTGC GTCGCCGCAA GCGTGAGGCC GAGGCTGCTG CCAAAGCGGC ACAGGAAGCT GCTGCAGCCT CCCAGGAACC AGCCTTGGAA ACCGCCGATG AGCACAAACC TCATCACGGC TGA
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Protein sequence | MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGKITRIE PSLEAAFVDF GSERHGFLPL KEISREYFKK APEGRVNIKE VLSEGQEVIV QVEKEERGNK GAALTTFISL AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLTVPG DMGLIVRTAG LGRSSEEMQW DLDYLLQLWT AIKEASLDRA APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALT FIRQVMPQYA SKVKLYEDSV PLFNRFQIES QIETAFQRVV DLPSGGSIVI DPTEALVSID INSARATKGS DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV RECLEADRAR VQVGRISRFG LLEMSRQRLR PSLGESSGIV CPRCSGTGII RDVESLSLAI LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRARIIIL PNDHLETPHF EVQRLRDDNP EVLNNQSSYE IAAAEAEEAP QPTATRTLVR QEAAVKTAPA RANAPVPAAA EEPQAAAPVA PAPSAPEPSL FKGLVKSLVS LFAGKDEPAA APVAPAAEKP AAERSPRNEE RRNGRQQSRN RNGRRDEERK PREERAERAP REERAPREER APREERAPRE ERAPREERAP REERAPREER APREERTPRQ PREDRRSNRG EERVRELREP LDATPPAERE ERQPREERVA REERAPREER APREERAPRE ERAPREERAP REERAPREER APREERAPRE ERAPREERAP RPPREERQPR AAEEATEQAA ELAEEQLPGE ELLQDEQEGT DGERPRRRSR GQRRRSNRRE RQRNANGELI DGSEEEGSEE QPQQHQATEL GAELAAGLAV TAAVASSNIS SDAEAQANQQ AERATAEVAA VAETDNSEAA QPVEQAEVVT KAEEASVAPA VEQPVTEPVA AAEATAEPVV EMAPQPVAED APAAEPAVVA ETVVTETPAE APAVEAGEIE QAPAVVEVAP VAAQPAPVVE AQPEVVAEPA PAVVEPATVM LANGRAPNDP REVRRRKREA EAAAKAAQEA AAASQEPALE TADEHKPHHG
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