| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3808 |
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| Symbol | |
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| ID | 5193626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4268735 |
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| End bp | 4269736 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588275 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001269116 |
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| Protein GI | 148549014 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0127606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGT GCTTCAATTC CATAAAAAAT TGTTATGATC CCGTAATGAC GACCAATACC
CCTCCGACTT CCGGCGTTCA GCTGATCGAA GTCGCGCCGG AGCTTGCCGG CCAACGCATT
GATAATTTCC TCATCACGGC CCTCAAGGGC GTGCCCAAGA CACTGGTCTA CCGCATCCTG
CGCAAGGGTG AGGTGAGGGT CAACAAGGGC CGTGTCAAGC CGGAGTACAA GATCCAGGCC
GGCGACATCG TGCGGGTTCC GCCCGTCCGC TTGCCGGAAC GAGACGAGCC GGCGCCGGTG
GCCCAAGGCC TGCTGCAGCG TCTGGAAGCC GCCATTGTCT ACGAGGACAA AGCGCTTATC
GTGATGAACA AGCCGGCCGG CATCGCCGTG CACGGCGGCA GTGGCCTGAG CTTCGGGGTG
ATCGAGGCGC TGCGCCAGTT GCGCCCGGAC GCCAAGGAGC TGGAGCTGGT GCACCGCCTG
GATCGCGACA CGTCTGGCCT GTTGATGATC GCCAAGAAGC GCAGCATGCT GCGCCACCTG
CATGCCGCCC TGCGCGGCGA TGGTGTCGAC AAGCGCTACA TGGCGCTGGT GCGCGGCCAC
TGGCCCACCT CGAAAAAGCA GGTCAACGCG CCGTTGCTCA AGAGCAACCT GCGTTCCGGC
GAGCGCATGG TCGAAGTGAA CGATGAAGGC AAGGAGGCGC TGACCCTGTT TCGCGTGCTG
CGCCGCTTTG GCGACTTTGC CACCATTGTC GAGGCGCGCC CGATCACCGG TCGTACCCAT
CAGATTCGCG TGCACACCTT GCATGCCGGG CACATGATCG CTGGCGACAG CAAATACGGC
GACGAAGACT TCAGCCGGGA AATTCGCGAG TTGGGTGGCA AGCGCCTGTT CCTGCATGCC
TACGCGTTGA CTGTACCGCT GCCCGACGGT GGCGAGTTGA AGCTCGAGGC GCCTGTGGAT
GAGGTCTGGG CGAAAACCGT TGATCGTTTG AGTGCGTCCT GA
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| Protein sequence | MIKCFNSIKN CYDPVMTTNT PPTSGVQLIE VAPELAGQRI DNFLITALKG VPKTLVYRIL
RKGEVRVNKG RVKPEYKIQA GDIVRVPPVR LPERDEPAPV AQGLLQRLEA AIVYEDKALI
VMNKPAGIAV HGGSGLSFGV IEALRQLRPD AKELELVHRL DRDTSGLLMI AKKRSMLRHL
HAALRGDGVD KRYMALVRGH WPTSKKQVNA PLLKSNLRSG ERMVEVNDEG KEALTLFRVL
RRFGDFATIV EARPITGRTH QIRVHTLHAG HMIAGDSKYG DEDFSREIRE LGGKRLFLHA
YALTVPLPDG GELKLEAPVD EVWAKTVDRL SAS
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