Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3807 |
Symbol | |
ID | 5193625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4268057 |
End bp | 4268731 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640588274 |
Product | HAD family hydrolase |
Protein accession | YP_001269115 |
Protein GI | 148549013 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.118188 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAG GCTATGAGCT ACTGATCTTT GACTGGGACG GCACCCTGGC CGATTCCATT GGTCGTATCG TCGAGGCCAT GAATGTCGCC GCAGAGCGTG CCGGCGAGGC ACAGAGCAGC GACGATGCGG TCAAGGGCAT CATCGGCCTG GCCTTGGACG AGGCGATCCA CACCTTGTAC CCGCACCTGG TGCCCGCAGA GGTTGCCAGC TTCCGCCAGC ACTATGCCGA TGTCTACGTT GCACTGGATC AGCAACCTTC GCCGCTGTTC GATGGCGTGG TCGAGTCGCT GGATGCCTTT CGCGCCGAGG GTTACCGCCT GGCGGTGGCC ACCGGCAAGG CCCGTCGCGG GTTGGATCGG GTGCTCAAGG CTAATGGCTG GGAGCGTTTC TTCGACATCA CCCGTGCCGC TGACGAGACC CGTGGCAAGC CACACCCGCT GATGCTTGAG GAAATCCTCG GGCATTGTGG CGTCGAACCG TCGCGTGCGC TGATGGTCGG AGATTCGGCA TTCGACCTGC AGATGGCCAG CAATGCCGGC ATGCATTCGG TGGCGGTTGG TTATGGTGCC ATGTCGCTGC AGGCGCTGGC CGAGTTTGGC CCGCAGGTAT GTATCGATCA CTTTTCCCAG TTGCGCGAGT GGCTGGGTGG TTCCGCAATT CCATTTCCAA GGTAG
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Protein sequence | MKKGYELLIF DWDGTLADSI GRIVEAMNVA AERAGEAQSS DDAVKGIIGL ALDEAIHTLY PHLVPAEVAS FRQHYADVYV ALDQQPSPLF DGVVESLDAF RAEGYRLAVA TGKARRGLDR VLKANGWERF FDITRAADET RGKPHPLMLE EILGHCGVEP SRALMVGDSA FDLQMASNAG MHSVAVGYGA MSLQALAEFG PQVCIDHFSQ LREWLGGSAI PFPR
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