Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3562 |
Symbol | |
ID | 5192398 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3980423 |
End bp | 3981127 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640588018 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001268871 |
Protein GI | 148548769 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.100156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGTAG AAAAAGTTGC GATCATCACA GCAGGTGGCA GTGGTATGGG CGCGGCAGCG GCACGGCGCC TGGCCGCTGA CGGGTTCAAG GTCGGCATCC TGTCCTCCTC GGGCAAGGGC GAAGCGCTGG CTGCCGAGCT TGGCGGTGTG GGTATAACAG GTAGCAACCA GTCGCTTGAG GACCTGAAAC GCCTGGTCGA TGCCGTGGTG GAAAAGTGGG GGCGCATCGA CGTGCTGGTC AATAGCGCCG GCCATGGTCC GCGCGCGCCA ATCCTGGAAA TCAGCGACGA AGACTGGCAC AAGGGCATGG ACACCTATCT GCTCAATGTC ATTCGCCCGA CTCGCCTGGT GACGCCCTAC ATGCAGCGCC AGAAAGGGGG TGTGATCATC AACATTTCCA CCGCCTGGGC GTTCGAGCCG AGTGAGCTGT TCCCGACGTC TGCAGTGTTC CGTTCGGGCT TGGCCGCATT CACCAAAATC TTCGCCGACC AATTCGCCGG GGACAACGTG AGGATCAACA ACGTCCTCCC CGGCTGGATC GACAGCCTGC CGGCCACCGA ACAGCGCCGC GACAGCGTGC CGCTCAAACG CTATGGCACC CGCGAGGAAA TCGCCGCCAC CATCGCGTTT CTCGCCAGCG AAGGCGCTGC CTACATCACC GGGCAGAACA TCAAGGTCGA TGGCGGCGTC ACACGTAGCG TTTGA
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Protein sequence | MSVEKVAIIT AGGSGMGAAA ARRLAADGFK VGILSSSGKG EALAAELGGV GITGSNQSLE DLKRLVDAVV EKWGRIDVLV NSAGHGPRAP ILEISDEDWH KGMDTYLLNV IRPTRLVTPY MQRQKGGVII NISTAWAFEP SELFPTSAVF RSGLAAFTKI FADQFAGDNV RINNVLPGWI DSLPATEQRR DSVPLKRYGT REEIAATIAF LASEGAAYIT GQNIKVDGGV TRSV
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