Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3543 |
Symbol | |
ID | 5192597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3959776 |
End bp | 3960732 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640587999 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001268852 |
Protein GI | 148548750 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.319397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGCCG GGTTACATTG CACAAATGGC AAGTTTGCAA AGCTGACATT CATCAGGAGC AATGTAATGC TCGGACAAGT GCACGACCCC GACCTGCACC TGCTGCGGCT GTTCGTCACT GTAGTCGAGG CGGGTGGCTT CAGCGCCGCT CAAGGCGTGC TGGGCCTGAG CCAGCCCACC ATCAGCCAGC GCATGGCGCA ACTGGAGACA CGCGTGGGTT ACCGCCTGTG CAGCCGCGGC AAGGGTGGTT TTCGCCTGAC GGAAAAAGGT GAATTGCTAT TGGACGCGGC GCATGGGCTA CTGCTGAACA TTGAGCAGTT TCGCCAGCAG GCCAACGGCG TTGCCGGGCG GCTGCTGGGA ACTGTGCGCA TAGGCATGGC GGAAAATCAG GACAAGGCGG TGAGCCTGAA ACTGGCGGCG GCCATTGCGG CATTTCGCAG GCGAGAAGAA TCGGTGCAAC TGGAGCTTGT CAGTGCACCG CCGGCGGAGC TGGAACGGCT GTTGCTGGAG CAGCGGTTGG ACTATGCCAT CAGCTATTTT TCCGGCAACC AGGCGGCCTT TGATTACCAG CCCTTGTTCG CGGAGCGCCA GCGGCTGTAT TGCGGCAAGG GGCATGTGCT GTATGGGGAA ACGGATGTTG GGCTTGAGCA GTTGCTGGAC ATGGACCAGG TGCGCCATCC GTACCGTTTT CTCAAAGGGG GCGAGCCGTT CCAAAGCAGA CGCAGCACGG CAGTGGCGGA GCAGATCGAA AGCGTGCTGA CGTTCATTCT GTCTGGGCGG CATATTGGCT ACTTGCCATG CCACTGTGCA CAGGGCTGGG AGGCCGAGGG GCTGTTATGG GCGCTGGACC CTGAGCTTGA TTTTGGGGTG CCGTTCACCC TGGCCCGGCA CCGGGCACAG GGGGTTGGCG AGGCAGCCCA TGTATTTGCG CAGGATTTGC TGGCGGCGTT TGCCTGA
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Protein sequence | MPAGLHCTNG KFAKLTFIRS NVMLGQVHDP DLHLLRLFVT VVEAGGFSAA QGVLGLSQPT ISQRMAQLET RVGYRLCSRG KGGFRLTEKG ELLLDAAHGL LLNIEQFRQQ ANGVAGRLLG TVRIGMAENQ DKAVSLKLAA AIAAFRRREE SVQLELVSAP PAELERLLLE QRLDYAISYF SGNQAAFDYQ PLFAERQRLY CGKGHVLYGE TDVGLEQLLD MDQVRHPYRF LKGGEPFQSR RSTAVAEQIE SVLTFILSGR HIGYLPCHCA QGWEAEGLLW ALDPELDFGV PFTLARHRAQ GVGEAAHVFA QDLLAAFA
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