| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3497 |
|---|
| Symbol | |
|---|
| ID | 5194190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3906136 |
|---|
| End bp | 3907335 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640587949 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001268807 |
|---|
| Protein GI | 148548705 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.405337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.792508 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGGCG ATGACAACAG CTGCGCAAGC ACTGCCAAAA GCCTGCCGAA GATGCCCCGC
AGCATCTGGG CGCTGGGCTT CGTGTCGATG TTGATGGACA TTTCCTCGGA GATGATCCAC
GCCCTACTGC CTCTGTACAT GGTCAGTGTG CTCGGCGCTT CGGTGATCGC GGTGGGGTTC
ATCGAAGGAA TCGCCGAGTC GACTGCATCG TTCACCAAGG TGTTCTCTGG CGCCCTCAGC
GACCGACTGG GTAAACGCAA GCTGCTGACA GTGATCGGCT ATGGCCTGAG TGCGCTGATG
AAGCCGGTAT TTCCCATGGC CCCCGGACTT GAGTGGCTGA CTGCGGCACG CTTCGTCGAC
CGTGTCGGTA AAGGCATTCG GGGGGCACCG CGTGATGCAC TGGTGGCCGA TGTTACGCCG
GTCGAGCTGC GCGGCGCGGC GTTCGGCCTG CGTCAGGCGC TCGATACCGT GGGCGCTATC
CTCGGGCCAT TGCTGGCGAT CGTGTTGATG TGGCTGACAG CGAGCCATTT CCAGACCGTG
TTCTGGGTAG CTATTATCCC GGCGTTCGTG GCGGTGTATA TCCTAGTTGC CTTCGTTCAC
GAACCTGAAG CCTCAGCTAT GGGGCGTCCG GTACGCTCAC CGTTGGCACT GCACGCGCTG
CGGCGCCTCG GGCCGGTCTA TTGGCGCCTG ATCGGTCTGG CCACGTTGTT CACCCTCGCC
CGTTTCAGCG AGGCGTTCTT GCTGCTGCGG GCTCAGAACA TAGGCCTGAC ACCGCTGTGG
GCGCCGGCGG TACTGGTATT GATGGCGATG GCCTACTCAC TGTCGGCCTA CCCTGCCGGC
GTGTTGTCGG ACCGAGTGGG GCGCCGTGGC GTGCTGATGG CCGGGCTAGG CCTGCTGATC
ACTGCCGACC TGCTGCTGGC CCTTTTGCCA GGATGGGTGG GGCTTGCCTT TGGGGTAACG
GCCTGGGGCC TGCACCTGGG CTTCAGCCAA GGCATCTTCT CTGCCATGAT TGCCGACAGC
GCCCCCGCCA ACTTGCGCGG TACCGCCTTC GGCCTGTTCA ACCTGCTGAC CGGTGCGGCG
CTGCTGATAG CCAGCGTGGT TGCCGGATTG CTATGGGAGA GTGCGGGGTT CCAGGCAACC
TTCCTGGTGG GTGCAGGGTT TGCCGTCACC ACCCTTGCAG GACTGACGCT GCTGCGCTGA
|
|---|
| Protein sequence | MRGDDNSCAS TAKSLPKMPR SIWALGFVSM LMDISSEMIH ALLPLYMVSV LGASVIAVGF
IEGIAESTAS FTKVFSGALS DRLGKRKLLT VIGYGLSALM KPVFPMAPGL EWLTAARFVD
RVGKGIRGAP RDALVADVTP VELRGAAFGL RQALDTVGAI LGPLLAIVLM WLTASHFQTV
FWVAIIPAFV AVYILVAFVH EPEASAMGRP VRSPLALHAL RRLGPVYWRL IGLATLFTLA
RFSEAFLLLR AQNIGLTPLW APAVLVLMAM AYSLSAYPAG VLSDRVGRRG VLMAGLGLLI
TADLLLALLP GWVGLAFGVT AWGLHLGFSQ GIFSAMIADS APANLRGTAF GLFNLLTGAA
LLIASVVAGL LWESAGFQAT FLVGAGFAVT TLAGLTLLR
|
|---|
| |