| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3436 |
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| Symbol | prpB |
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| ID | 5193541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3840622 |
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| End bp | 3841512 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640587884 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001268746 |
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| Protein GI | 148548644 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00574123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.104863 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTCA AGAGCACCCC CGGTCAGCGT TTCCGTGACG CCGTTGCCGC TGAACATCCG
CTGCAGGTAG TTGGTGCCAT CAACGCCAAC CATGCCCTGC TGGCCAAGCG CGCCGGCTTC
AAGGCCATCT ACCTGTCAGG TGGCGGTGTG GCCGCCGGCT CCCTGGGCCT GCCAGACCTG
GGCATCACTG GTCTGGACGA CGTGCTCACT GACGTGCGTC GTATCACCGA CGTGTGCGAC
CTGCCGCTGT TGGTGGATGT CGACACCGGC TTCGGCGCTT CGGCCTTCAA CGTTGCCCGT
ACCGTGCGCT CGATGAGCAA GTTCGGCGCT GCCGCCATTC ATATCGAGGA CCAGGTTGGC
GCCAAGCGTT GTGGCCACCG TCCCAACAAG GAAATTGTCA GCCAGCAGGA AATGGTCGAC
CGTATCAAAG CTGCTGTCGA CGCCCGCAGC GATGACAGCT TCGTGATCAT GGCGCGTACC
GATGCGCTGG CCGTCGAAGG CCTGAACGCC GCCCTGGACC GTGCCGAGGC GTGTGTCGAA
GCGGGCGCCG ACATGATCTT CCCGGAAGCC ATCACCGAAC TGCAGATGTA CAAGACTTTC
GCTGATCGGG TGAAGGCACC GATCCTGGCC AACATCACCG AGTTCGGTGC CACGCCGCTG
TACACAACCG AAGAGCTGGC CTCGGTCGAC GTGTCGTTGG TGCTGTACCC GCTGTCGGCG
TTCCGCGCCA TGAACAAAGC AGCCGAGAAC GTGTATACCG CGCTGCGCCG TGACGGCACG
CAAAAGAACG TGATCGACAC CATGCAGACT CGCATGGAGC TTTACGATGC CATTGGTTAT
CACGCCTTCG AGCAGAGCCT CGATGCACTG TTTGCCCAGA AGAAGGGCTA A
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| Protein sequence | MTVKSTPGQR FRDAVAAEHP LQVVGAINAN HALLAKRAGF KAIYLSGGGV AAGSLGLPDL
GITGLDDVLT DVRRITDVCD LPLLVDVDTG FGASAFNVAR TVRSMSKFGA AAIHIEDQVG
AKRCGHRPNK EIVSQQEMVD RIKAAVDARS DDSFVIMART DALAVEGLNA ALDRAEACVE
AGADMIFPEA ITELQMYKTF ADRVKAPILA NITEFGATPL YTTEELASVD VSLVLYPLSA
FRAMNKAAEN VYTALRRDGT QKNVIDTMQT RMELYDAIGY HAFEQSLDAL FAQKKG
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