Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3201 |
Symbol | |
ID | 5194073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3616792 |
End bp | 3618039 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640587645 |
Product | outer membrane porin |
Protein accession | YP_001268511 |
Protein GI | 148548409 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.27407 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0173746 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAATGCC GCACCCTGTA CCCGCTCGTC CCCACATTCA CACTGGCAGC CAGCCTGCCA CTGCAAGCCC TGGCCGAAGG CTTCGTCGAC GATGCCAAGG CAAGCCTGAC GTTGCGTAAC TTCTACATGA ACCGCGACTA CACGGGCACG GCAAGCCAAG GCAAAGCCGA GGAATGGACG CAAAGTTTCA TCCTCGACTT CAAGTCCGGC TTCACCCCCG GCGTGGTCGG TTTCGGCGTT GACGTGCTGG GCCTTTACAG CATCAAACTT GATGGCGGCA AGGGCACCGC CGGCACGCAG TTGCTGCCTG TTCATGACGA CGGGCGCCCG GCGGACGACT TTGGCCGCAC GGCGCTGGCG GGCAAGATGC GGGTGTCCAA GACGGAACTC AAAGTCGGTG AGTGGTCGCC TACCCTGCCC ATCCTGCGCG CCGATGACGG CCGCTCGCTG CCACAAACCT TGCAGGGCGC GCAGGTCACC TCCAACGAGC TGGCCGGCCT GACCCTGTAT GGCGGCCAGT TCCGCCAGAA CAGCCCGCGC AACGACGCCA GCATGCAGGA CATGAGCCTG TTCACGCGCA CAGCCTTCAC CTCGGACCGT TTCAACTTCG CCGGCGGTGA ATACCGCTTC AACCAGGAGC GCACCCTGGT CGGCGCCTGG TATGCCCAGC TGGAAGACAT CTACCAGCAG CGCTACTTCC AGGTGCAGCA TCAACAGCCG CTGGGCAACT GGGTACTGGG CGCCAACCTG GGCTACTTCT GGGGCAAGGA CGACGGTGGC GCCAAAGCCG GCGAACTGGA CAACCGCACC GCTTCGGGCC TGTTCTCGGC GAAGCTGGGT GGCAACACGT TCTACGTCGG CTTGCAGAAG GTCATGGGCG ATGATGAATG GTTCCGGGTC AATGGCACCA GCGGCGGCAC GCTGGCCAAC GACGCCTTCG GCTCCAGCTA TGAAAGCGCC CGCGAGCGCT CCTGGCAGGT GCGCCACGAC TTCAACTTCG TGGTGCTTGG CATACCCGGC CTGACCCTGA TGAACCGCTA TATCCACGGT GACAACGTGC ACAACGCCAG CACCCAGGAC GGCACCGAGT GGGGCCGCGA AAGCGAGCTG GCCTATGTGA TCCAGTCTGG GCCGTTCAAG GCCCTGAACC TCAAGTGGCG CAACTCCAGC CAGCGCCGGG ACTGGGGCAG CACCAACAGT TTCGATGAGA ACAGGCTGAT CGTCAGCTAC CCGCTGAGCC TGCTTTAA
|
Protein sequence | MKCRTLYPLV PTFTLAASLP LQALAEGFVD DAKASLTLRN FYMNRDYTGT ASQGKAEEWT QSFILDFKSG FTPGVVGFGV DVLGLYSIKL DGGKGTAGTQ LLPVHDDGRP ADDFGRTALA GKMRVSKTEL KVGEWSPTLP ILRADDGRSL PQTLQGAQVT SNELAGLTLY GGQFRQNSPR NDASMQDMSL FTRTAFTSDR FNFAGGEYRF NQERTLVGAW YAQLEDIYQQ RYFQVQHQQP LGNWVLGANL GYFWGKDDGG AKAGELDNRT ASGLFSAKLG GNTFYVGLQK VMGDDEWFRV NGTSGGTLAN DAFGSSYESA RERSWQVRHD FNFVVLGIPG LTLMNRYIHG DNVHNASTQD GTEWGRESEL AYVIQSGPFK ALNLKWRNSS QRRDWGSTNS FDENRLIVSY PLSLL
|
| |