| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3171 |
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| Symbol | |
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| ID | 5190905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3587209 |
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| End bp | 3588621 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640587617 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001268483 |
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| Protein GI | 148548381 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.12607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCAA CATCCACAAC CACCACCGCG AAAAGCGGGC ACGAGAGCAA GCTCAGTGCC
TCGCTGAAGT CGCGCCACCT GACGATGATG TCGATCGCCG GGGTTATTGG CGGCGCCTTG
TTCGTCGGTT CCGGCAGCGT GATCCACAGT GCCGGCCCAG CCGCTGTCCT GGCCTACCTG
GCAGGCGGCA TCCTGGTGGT GCTGATCATG CGCATGCTGG GTGAAATGGC GACTTCCTCG
CCTGACACCG GCTCGTTCTC AACCTACGCC GACCGCGCCA TTGGCCGTTG GGCCGGTTTC
ACCATCGGCT GGCTGTACTG GTGGTACTGG GTCATTCTCA TGGCCTGGGA AGCCTATGTG
GCGGGCAAGA TCCTGCATGG CTTCTTCCCC GACGTCAGCG TCAACGTGTT CGTGCTGGCC
ACGACCCTGT TGCTGATCAC CGTCAACTTC TTCAACGTCA AGCACTACGG TGAGTTCGAG
TTCTGGTTCG CCTTGATCAA GGTGATTGCG ATCGTCTGCT TCCTGATCGT GTGTACCGCT
GCCGTGATGA ACATCTGGCA GTTCGGTGAA GTGCGCGGCA TCAGCCACCT CACCGCCGAA
GGCTTCATGC CCAATGGCAT CACCACTGTG ATCGGTGCCT TGCTTGGGGT GATGTTCGCC
TTCCTCGGCG CCGAAATCGT CACCATCGCC GCTTCCGAAG CCAAAGACCC GGCTGCGCAG
ATCGTCAAGG CGACCAACTC GGTGGTCTGG CGTGTGTGCC TGTTCTACGT CGGCTCGATC
TTCCTGATCG TCTGCCTGGT ACCGTGGAAC GACCCGCACC TGGGTGTTTC TGGCTATGGC
GCCTATCGCC GTACCCTGGA ACTGCTGGGC GTGCCGTATG CCGAGCTGTT GATGAACTTC
GTGGTGCTGA CTTCGGTGAG CAGCTGCCTG ATCTCGGGCC ACTACACCGC TTCGCGCATG
CTGTTCTCCC TGGCCCAGCG TGGCGATGCG CCGTCGTTCT TCAAGATCAC CCGCGCCGGT
ACCGGTGTAC CGGTGTACGC GATCATGGGT TCGTGCGCCG TGGCCGTGGT GTGTGCATTG
ATCAACTTCA GCGAGACCCT GCGCCCGAAA GACGTGCTGG ACACCCTGAT GAACACCACC
GGCATGATCG CCCTGCTGGT GTACCTGGTT ATCGCCTTCT CGCAGCTGCG CATGCGCCGC
AAGCTGATTG CCGAGGGCAA GGAAGTACGC CTGAAGATGT GGCTGTTCCC GTGGCTGACC
TACCTGGTGA TCGCGTTCAT CGTGGCTGCC CTGGTCACCA TGGCCTTCAT GCCTGACTAC
CAGATTCTGG TCATTTCCAC CGGTATCGCT GCGGCGGTCG TGGTGGCGAT GGGTGTGGTG
CACCAGATCC GCTCTGGTAG CAAGCAGCAC TAA
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| Protein sequence | MDATSTTTTA KSGHESKLSA SLKSRHLTMM SIAGVIGGAL FVGSGSVIHS AGPAAVLAYL
AGGILVVLIM RMLGEMATSS PDTGSFSTYA DRAIGRWAGF TIGWLYWWYW VILMAWEAYV
AGKILHGFFP DVSVNVFVLA TTLLLITVNF FNVKHYGEFE FWFALIKVIA IVCFLIVCTA
AVMNIWQFGE VRGISHLTAE GFMPNGITTV IGALLGVMFA FLGAEIVTIA ASEAKDPAAQ
IVKATNSVVW RVCLFYVGSI FLIVCLVPWN DPHLGVSGYG AYRRTLELLG VPYAELLMNF
VVLTSVSSCL ISGHYTASRM LFSLAQRGDA PSFFKITRAG TGVPVYAIMG SCAVAVVCAL
INFSETLRPK DVLDTLMNTT GMIALLVYLV IAFSQLRMRR KLIAEGKEVR LKMWLFPWLT
YLVIAFIVAA LVTMAFMPDY QILVISTGIA AAVVVAMGVV HQIRSGSKQH
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