Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3162 |
Symbol | |
ID | 5193304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3576946 |
End bp | 3578319 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640587608 |
Product | major facilitator transporter |
Protein accession | YP_001268474 |
Protein GI | 148548372 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.688084 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCACT CCAGCTCGCA AGCAAAGAAA GCGACCGCCA GTGGATGGAT AGGCTCGGCA CTCGAGTACT ACGACTTCTT CATCTACGCC CAGGCCGCTG CGCTGATTTT CCCGCAGATT TTCTTCCCTA ACACCGACCC GAAAATGGCC ATCATTGCCT CGTTGGCCAC CTATGGCGTG GGCTACCTGG CACGCCCGAT CGGCGCCTTC GTACTGGGCC ACTGGGGTGA CACCCGCGGT CGCAAGAACG TACTGCTGCT GTGCATGTTC CTGATGGGCC TGTCGACCAT GGCTGTCGGC CTGCTACCCA CCTACCACGA CATCGGCTAC CTCGCACCGG CCTTGCTGGT GGTGTTGCGC CTGATCCAGG GCTTTGCCGT GGCCGGGGAA ATTTCCGGTG CCAGCTCGAT GATCATGGAG CACGCGCCGT TTGGCCGAAG AGGCTACTAC GCCAGTTTCA CCCTGCAAGG TGTGCAAGCG GGCCAGGTAC TGGCGGCGGC GGTATTCCTG CCACTGGCTT ACTTCATGCC CAGCGAAGCC TTTACCGAAT GGGGCTGGCG CATTCCGTTC CTGATGAGCG CCATCGTGCT GATTGCCGGC TTCATCATCC GCAAGGAAGT GCACGAAACC CCAGCGTTCG TCAAAGAAGA GAAACAGGAC AAGGTTGTCA AGTCGCCCAT CAGCGAAGCC TTCCGCCACA GCTGGAAGCA CATGGTGCTG GTAATGTTCA TGGCCCTGAT GAACGTGATC CCGGTCGTGG CCACCATCTT CGGCGCGGCC TACGCGGTGC AGCCGGCGTA TGGCATCGGC TTCGACAAGA GCGTGTACCT GTGGATTCCG GTGGTCGGCA ACATCGTCGC GGTGCTGGTG ATCCCGTTCG TGGGCAACCT GTCGGACAAG ATCGGCCGTC GCCCGACCAT GATCGCTGGC TGCCTGGGCT CTGGCCTGCT GGCCTTCGTC TACCTGTATG CGATCAGCAT CCAGAACGTG CCAATGGCGT TCGCCGCCTC GATCGTCATG TGGGGCATGG TCTACCAGGG TTACAACGCG GTGTTCCCAA GCTTCTACCC AGAGCTGTTC CACACCCGCT ACCGCGTTAC GGCCATGGCC ATCGCGCAGA ACATCGGCAC CATGCTGACC GCCATGCTGC CCGCGCTGTT CGCAATGGTT GCTCCGCCGG GCTCGGACAA CATTCCGCTG GTAGTCGGTG GGCTGGCCTT CTTCATCACC GGCGTGTGCG CCCTGGCGGC CTACATTGCC CCGGAAACCC ACCGCCTGGC GATGGACGAC CTGGGCAACC CAGACGCCAA GCCGATGGAA AAGGCTGCCT ATGAAGCCAG CCGTAAAGGT AGCTTTCAGG CGGTGAGCCA CTGA
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Protein sequence | MAHSSSQAKK ATASGWIGSA LEYYDFFIYA QAAALIFPQI FFPNTDPKMA IIASLATYGV GYLARPIGAF VLGHWGDTRG RKNVLLLCMF LMGLSTMAVG LLPTYHDIGY LAPALLVVLR LIQGFAVAGE ISGASSMIME HAPFGRRGYY ASFTLQGVQA GQVLAAAVFL PLAYFMPSEA FTEWGWRIPF LMSAIVLIAG FIIRKEVHET PAFVKEEKQD KVVKSPISEA FRHSWKHMVL VMFMALMNVI PVVATIFGAA YAVQPAYGIG FDKSVYLWIP VVGNIVAVLV IPFVGNLSDK IGRRPTMIAG CLGSGLLAFV YLYAISIQNV PMAFAASIVM WGMVYQGYNA VFPSFYPELF HTRYRVTAMA IAQNIGTMLT AMLPALFAMV APPGSDNIPL VVGGLAFFIT GVCALAAYIA PETHRLAMDD LGNPDAKPME KAAYEASRKG SFQAVSH
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