| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3156 |
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| Symbol | |
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| ID | 5194058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3568881 |
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| End bp | 3570221 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640587602 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001268468 |
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| Protein GI | 148548366 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.55639 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATGA CTCAACATGC CGAACTGATC CCCGCCGAGA CCAGCCACCT GATCGACCTG
GACGCGGGCC GCCCGGTACG CTGGGGCGTA TGGCTGGTCA TCGCCGGCTT CGGCGGCTTC
CTGCTGTGGT CCTGCCTGGC GCCACTGGAC GCCGGCGTGG TCGCCACCGG TACGGTCAAG
GTCACCAGCA ACCGAAAGGC GGTCCAGCAC CTGAGCGGGG GCACCGTTGA AGCGATCATG
GTGCGCGAAG GCGATGTGGT GAAGAAAGGC CAGGAAGTGG TGCGCCTCGA TGCCCTGCGT
GCGGTGGCCG AACAAGGCGC ACTCAGCGCC CAGTACATCG TCAGCAAGAC CGTGGAAAAC
CGCCTCGAAG CCGAGCGCGA TGGCCGCGAT ACCGTGACGT TCGACCCTGC CCTGCTGGAA
CACTACGCCA ATGACCCACG CCTGCTGGCC GCCATGGACC TGCAACAGCG CCTGCTCGAT
ACCCGCCGCG CGGGCCTTGC CGGTGAACTG AGCATCCTTG AAGAAAACCT GACTGCCTCG
GCAGTGCAAC TGAAGGGCCT GCAGCAGGTG TACGGCGCCC GCGCCTCGCA GATCGGCTTC
CTCAACCAGG AACTGCAAGG CACCCGGGTA CTGGCCGCCG AAGGTTATGT ACCCCGCAAT
CGCCTGCTGG AGCTGGAGCG CAGCAATGCC GACCTGTCCG CCGGCCAGGC CGAAAACCTC
AATAACATTG CCCGGGCGCG CAGCCAGGCC ACCGAGATCA AGCTGCGCAT CCTGCAGCGC
CAGCACGATT ACCTGAAGGA GGTGGAGTCG CAACTGACCG ATACCGCCAA GGAAAACACC
ACCCTGGCCG ATCGCTTGCG CGCACTGGAC TATGAAGTGA CCCACACGGT GATCCGCTCG
CCGATCGACG GCATGGTGCA GGGCCTGAGC ATCGCCACGG TCGGCGGCAT CATCCAGCCC
GGGGCCAAGA TCATGGAAGT GGTGCCGCTC GACCAGCCGC TGCAGGTCGA TGCGATGATC
CCGGTGCAGG CGATCGACAA GATGGTCCCA GGCCTTGCCG TGGACATCGC TTTCCCGGCC
TTCAACCATG CGCAGACACC GAACATTCCC GGCCGGGTAA AAACCATTTC CGCCGACCGG
CTGCTCGACG AAGAAAGCAA GCAGCCGTTC TACCTGGCCC AGGTCGAAGT GACGCCGGCC
GGCATGGGCT TGCTGGGCAG CAACCACATC CGCCCCGGCA TGCCTGCCAC CGTCACCATC
AAGACCGGCG AGCGCAACCT GCTCAGCTAC CTGCTCAAAC CAATGCTCGA ACGTGTGGAC
GCCGCGTTCA AGGAGCAATG A
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| Protein sequence | MQMTQHAELI PAETSHLIDL DAGRPVRWGV WLVIAGFGGF LLWSCLAPLD AGVVATGTVK
VTSNRKAVQH LSGGTVEAIM VREGDVVKKG QEVVRLDALR AVAEQGALSA QYIVSKTVEN
RLEAERDGRD TVTFDPALLE HYANDPRLLA AMDLQQRLLD TRRAGLAGEL SILEENLTAS
AVQLKGLQQV YGARASQIGF LNQELQGTRV LAAEGYVPRN RLLELERSNA DLSAGQAENL
NNIARARSQA TEIKLRILQR QHDYLKEVES QLTDTAKENT TLADRLRALD YEVTHTVIRS
PIDGMVQGLS IATVGGIIQP GAKIMEVVPL DQPLQVDAMI PVQAIDKMVP GLAVDIAFPA
FNHAQTPNIP GRVKTISADR LLDEESKQPF YLAQVEVTPA GMGLLGSNHI RPGMPATVTI
KTGERNLLSY LLKPMLERVD AAFKEQ
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