Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3077 |
Symbol | |
ID | 5194700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3461777 |
End bp | 3463027 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640587523 |
Product | outer membrane porin |
Protein accession | YP_001268389 |
Protein GI | 148548287 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0293927 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATCC TTTGCCCCCC TTGCCGCATG ACGGTGGCTT GCGCTTGCCT GCTGCTTGGC GCCGGCAGCG CCCAGGCCCA AGGCTTCAGC GAAGACGCCA AGGTCGGCCT GACCCTGCGC AACTTCTACA TCAACCGCAA TTTCGTCGAC CCGGCCTACC CCCAGGGCAA GGCCGAAGAA TGGACGCAAA GCTTCATCCT CGACGCCCGC TCCGGCTTTA CCCAGGGCGT GGTCGGCTTT GGTGTGGATG TGCTGGGGCT GTACTCGGTC AAGCTCGACG GCGGCCGCGG CACTGCCGGT ACCCAGTTGC TGCCGGTGCA CGACGATGGC CGCCCGGCGG ATGATTTCGG CCGCCTGGGT GTGGCACTCA AGGCACGCGT TTCAGCCACA GAGCTGAAGG TTGGCGAATG GTCGCCGATG CTGCCGGTGC TGCGTTCGGA CGACGGTCGC TCGCTGCCCC AGACCTTCCA AGGCGCCCAG CTCACCTCCC GCGAAATCGA CAACCTGACC CTTTTCGGCG CACGTTTGCG TGGCAACAGC CCGCGCAACG ACGCCAGCAT GGAGGACCTG TTCATGGCCG GCAGGCCCAC CGCCACCTCG GACCGCCTGG ACATCCTTGG TGCCGAATAC CTGTTCAACG AAAAGGCCAC CCAACTCGCC GTCTGGCATT CGGACCTGCA AGACATCTAC CGCCAACAGT ACTACAACCT GATCCACAGC CAGGCCGTGG GCAACTGGAC CCTGGGGGCC AACCTCGGCT ACTTCGTCGG CAACGACAGC GGCCGCTCGC TGGCGGGTGC GATGGACAAC CGCACCACCT CGCTGCTGCT CTGCGCACGT ACCGGCGGCC ATACCTTGTA TCTGGGGCTG CAGCGGGTCA GCGGCGACAC CGGCTGGATG CGGGTCAATG GCACTGCCGG CACCAGCCTG GCCAACGACA GCTACAACTC CAGCTACGAC AACGCCCACG AGCGCTCCTG GCAGCTGCGC TACGACCACA ACTTCGCGGT CGACGGCCTG CCCGGCCTGC AATTCATGAC GCGTTACATC AGCGGCGACA GCGTGCGCGT CGGCAGCGTG CGCGATGGCA AGGAATGGGG CCGCGAAACC GAGCTGGCCT ACACCCTTCA AAGCGGCACA TTGCGTGACC TGACCGTGAG ATGGCGCAGT TCAACCTTGC GCCGGGACTT CAGCAGCAAT GAGTTCGATG AGCACCGGGT GATCGTGAGT TATCCGTTTT CGATCTTGTA A
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Protein sequence | MNILCPPCRM TVACACLLLG AGSAQAQGFS EDAKVGLTLR NFYINRNFVD PAYPQGKAEE WTQSFILDAR SGFTQGVVGF GVDVLGLYSV KLDGGRGTAG TQLLPVHDDG RPADDFGRLG VALKARVSAT ELKVGEWSPM LPVLRSDDGR SLPQTFQGAQ LTSREIDNLT LFGARLRGNS PRNDASMEDL FMAGRPTATS DRLDILGAEY LFNEKATQLA VWHSDLQDIY RQQYYNLIHS QAVGNWTLGA NLGYFVGNDS GRSLAGAMDN RTTSLLLCAR TGGHTLYLGL QRVSGDTGWM RVNGTAGTSL ANDSYNSSYD NAHERSWQLR YDHNFAVDGL PGLQFMTRYI SGDSVRVGSV RDGKEWGRET ELAYTLQSGT LRDLTVRWRS STLRRDFSSN EFDEHRVIVS YPFSIL
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