| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3022 |
|---|
| Symbol | |
|---|
| ID | 5195488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3410789 |
|---|
| End bp | 3412315 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640587468 |
|---|
| Product | deoxyribodipyrimidine photolyase-related protein |
|---|
| Protein accession | YP_001268334 |
|---|
| Protein GI | 148548232 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3046] Uncharacterized protein related to deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.619117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGG GCCTGGTGCT GGGTGACCAA CTGTCGTTCG ACCTGGCAAG TCTGGCGTCC
CTTGACCCTG CTCGCGATGC GGTCCTGATG GCGGAAGTGG AGGGGGAGGC CCGATACGTA
CCGCATCATC CGCTGAAGAT CATTCTCATC TTCAGCGCCA TGCGGCATTT TGCCCAGGCC
CTGCGTGAAC GGGGTTGGCA GGTGCACTAT GTCGAGCTGG ATGCCGAGGG TAACAGCGGC
AGCATCGTGG GTGAGTTGCG TCGATGGCAA CAAGCCTTGG GCGCCACCCA CACTCACTTG
ACCGAGTGCG GTGAGTGGCG CCTGGAGCAG GCCTTGCGTG ATGCCGCACT GCCGCTTGTG
TGGTTTCGCG ACACGCGTTT TCTGTGCTCC CGTGAAGCCT TCGGGCGCTG GGCTACAGAA
CGTCGCCAGC TGCGTATGGA GCACTTCTAC CGTGGCATGC GCAAGCGAAC CGGCCTGCTC
ATGGAGCCTG ACGGCAGCCC GGCAGGTGGG GCCTGGAATT TCGATGGCGA CAATCGCAAA
CCGTTGCCAC GGCAGCTGCG TGGCCCGTTC GCTGCGCATT TCGCGCAAGA CGACATCACG
GCAGCGGTGG TAGCCTTGGT GCGTCAGCGC TTCAGCGACC ACTACGGGGG CGTCGACGGT
TTCGACTACC CCGTGACCCA CGCCGAGGCA CAACAGCTGT GGCAGCATTT TCTGGATTTC
GGCCTGGCGG CTTTCGGTGA CTACCAGGAT GCGATGGCCG AAGGCGAGCC GTACCTGTTT
CATGCGCGCA TCAGTGCGGC GCTCAACATC GGGCTTCTGG ATGTGCGTCG TCTGTGCGAC
GACGTCGACA AAGCCTGGCG CGAGGGGCGG GTGCCGCTCA ATGCAGCCGA AGGCTTCATT
CGCCAGCTGA TCGGCTGGCG TGAGTATGTG CGTGGCATCT ATTGGCAGCG CATGCCGGCG
TATGCCGGGC TCAATCATCT GAACAACGAC CGGGCGCTGC CAGATTTCTA CTGGACCGGG
CGCACCCGCA TGCGCTGCAT GGCGCAAGCC ATCGGGCAGA CCCTGCGGTT GGGCTACGCT
CACCATATCC AGCGGTTGAT GGTTACCGGC AACTTCGCCT TGCTGGCCGG TATCGTGCCA
ACCGCGATTT GTGAGTGGTA CCTGGCGGTC TACATGGATG CCTTCGAGTG GGTCGAACTG
CCCAACACGC TTGGCATGGT GATGCACGCC GATGGCGGCT ACCTGGGGTC CAAGCCGTAC
TGCGCCAGTG GTCGTTATAT CCAGCGCATG TCCGATCATT GCAAGGCTTG CAGTTACAGA
GTCGACCAGG TGACCGAAGA GGAGGCCTGC CCGTTCAATG CCTTGTATTG GCATTTTCTC
ATTCGCCATC GCCCCCAGCT CTCGGCTAAC CCGCGCCTGG CCCTGGTTTA TCGTAGCCTC
GATGGCATGC CCGCTGGCCG TCGCGATGCC GTGTGGCAAC GTGGCCAGTC ATTGCTGGCG
CGGCTCGATG CGGGGCAGGC GTTATGA
|
|---|
| Protein sequence | MRLGLVLGDQ LSFDLASLAS LDPARDAVLM AEVEGEARYV PHHPLKIILI FSAMRHFAQA
LRERGWQVHY VELDAEGNSG SIVGELRRWQ QALGATHTHL TECGEWRLEQ ALRDAALPLV
WFRDTRFLCS REAFGRWATE RRQLRMEHFY RGMRKRTGLL MEPDGSPAGG AWNFDGDNRK
PLPRQLRGPF AAHFAQDDIT AAVVALVRQR FSDHYGGVDG FDYPVTHAEA QQLWQHFLDF
GLAAFGDYQD AMAEGEPYLF HARISAALNI GLLDVRRLCD DVDKAWREGR VPLNAAEGFI
RQLIGWREYV RGIYWQRMPA YAGLNHLNND RALPDFYWTG RTRMRCMAQA IGQTLRLGYA
HHIQRLMVTG NFALLAGIVP TAICEWYLAV YMDAFEWVEL PNTLGMVMHA DGGYLGSKPY
CASGRYIQRM SDHCKACSYR VDQVTEEEAC PFNALYWHFL IRHRPQLSAN PRLALVYRSL
DGMPAGRRDA VWQRGQSLLA RLDAGQAL
|
|---|
| |