| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2806 |
|---|
| Symbol | |
|---|
| ID | 5190339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3189500 |
|---|
| End bp | 3190045 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640587256 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001268122 |
|---|
| Protein GI | 148548020 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.675672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGG GGACGCGACT CAAACTGGTG CGTGAACGCA ACAACCTCTC CCAACGGGAA
CTGGCCCGTC GCAGCGGGCT GACCAATTCG ACGATCTCGC AGATCGAGCA GAATCGCGTC
AGCCCTTCGG TCAGCTCCCT GAAAAAACTG CTCGAGGGCA TCCCCATGAG CCTGGCGGAG
TTTTTCAGCT TCGACGAGCC GGTGCGTGAG GAACGCTACG TATTCCGTGG TGGCGAACAA
CCCGACCTGG GCCGCAATGG CCTGCGCATG CTGCTGGTCG GCGCCAGCGT CGAAGGCCGC
CAAATGCGCA TGCTGCGTGA GCTGTACGCA CCCGGCGCCG ACTCTGGCGA GCCGATCGTG
CACGCTGAAG GCGAAGAATG CGGGTTGGTC ACCCGTGGCA CCGTCGAGCT GTGGGTCGAC
GGCCAGGTCA GCGTCCTCAA TTCGGGCGAC GGCTACTACA TCCCCACGAC CCTGCCGCAC
AGTTTCAAGA ACATCGGCCC GGATGAGGCC GAGATCATCA GCGCCAACAC GCCGGCGAAT
TTCTGA
|
|---|
| Protein sequence | MDTGTRLKLV RERNNLSQRE LARRSGLTNS TISQIEQNRV SPSVSSLKKL LEGIPMSLAE
FFSFDEPVRE ERYVFRGGEQ PDLGRNGLRM LLVGASVEGR QMRMLRELYA PGADSGEPIV
HAEGEECGLV TRGTVELWVD GQVSVLNSGD GYYIPTTLPH SFKNIGPDEA EIISANTPAN
F
|
|---|
| |