Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2335 |
Symbol | |
ID | 5190301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2662581 |
End bp | 2663996 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640586792 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001267658 |
Protein GI | 148547556 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGC TCAAACCCTT GACCCCAAGC TTGCTGGCAC TGGCCCTGGC GGCCTGTGCG GTAGGCCCGG ACTACCAGGC GCCAGCCACC GAACCTGCTC AACTGGGCAG CGATGTGCAG GCCAAGGCCT ACGACCGTAG TCGCTTCGAG AGCCTGTGGT GGAAGCAGTT CGACGACCCG GTGCTGAACC AGCTGGTGCA GGCTTCGCTG GACGGCAACC GTGACTTGCG CGTAGCTTTC GCCCGCCTGA AGTCGGCTCG CTCGATTCGC GAGGACGCCG AAAACGACCC GTTCCCGGTG GTCACCAGCC GTGCCAGCAG CGATCTCGGC AAAGGCCAGA TCCCCGGCCA GACCACCGAG CGGGTCAATA GCGAGCGCTA CGACCTGGGC CTGGACATGG CCTGGGAGCT TGACCTGTTC GGGCGCATCC AGCGCCAGAT CGAAGCCAGC GAAGCCCAGG AAGCGGTGGC CGCCGCCGAC CTGCAACAGT TGCAGGTCAG CCTGATCGCC GAGCTGGTGG ATGCTTATGG GCAGCTGCGT GGCGCGCAAT TGCGCGAGAA AATCGCCCTG GCCAACCTCA AGACCCAGCA GGAATCGCGC ACCATCACCG AAACCCTGCG CGATGCCGGC GTGGGCAACG ACCTCGACGT GGTGCGTGCC GATGCCCGCC TGGCCGGGGT CGAAGCCACC GTGCCGCAAC TGCAAGCCGA ACAGGCACGG GCGCGGCATC GCATCGCCAC CCTGCTCGGC CAGCGCCCTG ACGCGCTCAG TGTAGACCTG TCGCCCAAGG CCCTGCCGGC CATCGCCAAG GCGCTGCCGG TCGGTGACCC GGGTGAGCTG TTGCGCCGCC GCCCGGACAT CCGCAGCGCC GAGCGCCAGC TGGCGGCCGC CACCGCCAAC GTTGGCGTGG CCACCGCCGA CCTGTTCCCG CGCGTCAGCC TCAGTGGCTT CCTCGGCTTT ACCGCCGCCC GCGGCTCGCA GATCGGCTCT TCGGCGGCCA ACGCCTGGGC ACTGGGCCCG AGCATTACCT GGGCGGCCTT CGACCTGGGC AGCGTGCGGG CCCGCCTGCG CGGCGCCAAG GCCGATGCCG AAGGGGCACT GGCCAACTAC GAACAGCAGG TGCTGCTGGC ACTGGAAGAG TCGGCCAACG CCTTCAGCGA TTACGACAAG ACCCAGCAGC GTCTGCTGTC GCTGATGCGC CAGAGCGACG CCAGCCGCAA GGCTGCAGAA CTGGCCTCGA TTCGCTATCG CGAGGGTACC GTGGACTATC TGGTACTGCT CGATGCCGAA CGTGAGCGGC TAAGTGCTGA AGATGCACAA GCTCAGGGTG AAGTCGACCT TTATCGCGGC ATCGTCTCGA TCTACAAGGC CCTGGGTGGC GGCTGGCAAC CGGAGACGGT GGCCAGCGCA CACTGA
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Protein sequence | MNLLKPLTPS LLALALAACA VGPDYQAPAT EPAQLGSDVQ AKAYDRSRFE SLWWKQFDDP VLNQLVQASL DGNRDLRVAF ARLKSARSIR EDAENDPFPV VTSRASSDLG KGQIPGQTTE RVNSERYDLG LDMAWELDLF GRIQRQIEAS EAQEAVAAAD LQQLQVSLIA ELVDAYGQLR GAQLREKIAL ANLKTQQESR TITETLRDAG VGNDLDVVRA DARLAGVEAT VPQLQAEQAR ARHRIATLLG QRPDALSVDL SPKALPAIAK ALPVGDPGEL LRRRPDIRSA ERQLAAATAN VGVATADLFP RVSLSGFLGF TAARGSQIGS SAANAWALGP SITWAAFDLG SVRARLRGAK ADAEGALANY EQQVLLALEE SANAFSDYDK TQQRLLSLMR QSDASRKAAE LASIRYREGT VDYLVLLDAE RERLSAEDAQ AQGEVDLYRG IVSIYKALGG GWQPETVASA H
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