Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2313 |
Symbol | |
ID | 5193487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2633044 |
End bp | 2636172 |
Gene Length | 3129 bp |
Protein Length | 1042 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640586770 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001267636 |
Protein GI | 148547534 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAAT TCTTCATCGA TCGCCCGGTA TTCGCCTGGG TGGTCGCACT GTTCATCCTG CTGGCCGGCG CGCTGGCCAT CCCGCAGCTG CCGGTCGCCC AGTACCCCAA CGTGGCACCG CCGCAGGTGG AAATCTACGC CGTGTACCCA GGCGCCTCGG CGGCGACCAT GGACGAAAGC GTGGTCAGCC TGATCGAGCA AGAGCTCAAT GGCGCCGACA ACTTGTTGTA CTTCGAATCG CAGAGCAGCC TGGGCAGCGC CACCATCACC GCCACCTTCG CCCCGGGCAC CCACCCGGAC CTGGCCCAGG TCGACGTGCA GAACCGCCTG AAGGTGGTCG AGTCGCGCCT GCCACGCCCG GTCACCCAGC AAGGCCTGCA GGTGGAGAAA GTGTCCACCG GCTTCCTGCT GTTGGCCACC CTCACCTCCG AAGACGGCAA ACTCGATGAA ACCGCGCTGT CGGACATCCT GGCACGTAAC GTGATGGACG AAATCCGCCG CCTCAAGGGC GTCGGCAAGG CCCAGTTGTA TGGCTCCGAA CGCGCCATGC GCATCTGGAT CGACCCGCGC AAGCTGATTG GCTTCAACCT CACACCCAAC GATGTGGCCG AAGCCATCGC CGCGCAGAAC GCCCAGGTGG CCCCTGGCAG CATCGGCGAT CTGCCCAGCC GCAGCACCCA GGAAATCACC GCCAACGTGG TGGTCAAAGG CCAGTTGAGC AGCCCCGAAG CGTTTGCTGC CATTGTCCTG CGTGCCAACC CGGACGGCTC CACGGTCACC ATCGGGGATG TCGCCCGGGT TGAAATCGGC GCCCAGGAAT ACCAGTACGG CACGCGCCTG AACGGCAAAC CGGCCACGGC CTTCAGCGTG CAGTTGTCAC CCGGCGCCAA CGCCATGGAA ACCGCTACCC TGGTACGGGC GAAGATGCAG GACCTGGCGC GCTACTTCCC GGAAGGCGTC AAGTACGACA TCCCCTACGA CACCTCGCCG TTCGTCAAGG TGTCGATCGA GCAGGTCATC AACACCCTGT TCGAAGCCAT GCTGCTGGTG TTCGCAGTCA TGTTCCTGTT CCTGCAGAAC CTGCGCTACA CACTGATCCC GACCCTGGTC GTGCCAGTGG CATTGATGGG CACCTTCGCC GTGATGCTGG CCATGGGCTT CTCGGTCAAT GTGCTGACAC TGTTCGGCAT GGTACTGGCC ATCGGCATTC TGGTCGACGA TGCCATTGTG GTGGTGGAGA ACGTCGAACG CATCATGGCC GAAGAAGGCT TGCCGCCCAA GGACGCCACA CGCAAGGCCA TGGGCCAGAT CAGCGGTGCA ATCGTTGGCA TCACGCTGGT GCTGGTGGCG GTATTCCTGC CCATGGCCTT CATGCAAGGC TCGGTGGGGG TGATCTACCA GCAGTTCTCG CTGTCGATGG CGGTGTCGAT CCTGTTCTCG GCGTTTCTCG CCCTCAGCCT GACCCCGGCA TTGTGCGCCA CCTTGCTCAA ACCCGTGGCC AAGGGCGAGC ACCATGAACG CAAAGGCTTC TTCGGCTGGT TCAATCGCCG CTTCGAACGC ATGAGCAACG GCTACCAGCG CTGGGTGGTG CAGGCGCTCA AGCGCAGCGG CCGCTACCTG CTGGTGTACG CGGTGCTGCT GGCGGTGCTG GGCTACGGTT TCAGCCAGCT GCCTACGGCG TTCCTGCCCA CCGAAGACCA AGGCTACACC ATTACCGACA TTCAACTGCC GCCGGGCGCC AGCCGCATGC GCACCGAACA GGTAGCCGCG CAGATCGAGG CGCACAACGC CGAAGAACCG GGCGTGGGCA ACACCACCTT GATCCTCGGC TTCAGCTTCT CCGGTAGCGG GCAGAACGCG GCGCTGGCCT TCACCACCCT CAAGGACTGG TCCGAGCGCG GCGCCGACGA CAGCGCCCAG TCGATCGCCG ACCGCGCGAC CATGGCCTTC ACCCAGCTCA AGGACGCGAT AGCCTATTCG GTGCTGCCGC CCCCCATCGA CGGCCTCGGT GAGTCGACCG GTTTCGAATT TCGCCTTCAG GACCGTGGCG GCATGGGCCA CGCCGAGCTG ATGGCAGCCC GTGACCAGTT GCTCGAAAGC GCCAGCAAAA GCAAGGTGCT GACCAACGTG CGCGAAGCCT CGCTGGCGGA AAGCCCGCAG GTGCAACTGG AAATCGACCG CCGTCAGGCT AATGCACTGG GCGTGTCGTT TGCCGATATC GGCACGGTGC TGGACGTGGC AGTGGGCTCC AGCTACGTCA ACGATTTCCC CAACCAGGGC CGTATGCAGC GGGTGGTGGT GCAGGCCGAA GGTGACCAGC GCAGCCAGGT CGAAGACTTG CTGAACATTC ACGTGCGCAA CGACAGCGGC AAGATGGTGC CACTGGGTGC GTTCGTTCAG GCCAGGTGGG TCAGCGGCCC GGTGCAACTG ACCCGCTACA ACGGTTACCC GGCGGTGTCG ATCTCTGGCG AGCCAGCCGC CGGCTACAGC TCGGGCGAAG CCATGGCCGA AGTCGAGCGG CTGGTGGCGC AGCTACCGGC CGGTACCGGC CTGGAATGGA CCGGCCTGTC ATTGCAGGAG CGGCTGTCCG GTAGCCAGGC CCCGCTGCTG ATGGCGCTGT CGCTGCTGGT GGTGTTCCTG TGCCTGGCTG CGCTGTACGA AAGCTGGTCG ATCCCGACTG CGGTGCTGCT GGTCGTTCCG CTCGGCGTGC TCGGTGCGGT GCTGGCGGTG ACCTTGCGCG GTATGCCCAA CGACGTTTTC TTCAAGGTTG GCCTGATCAC GCTGATTGGC CTGTCGGCGA AGAACGCCAT CCTGATCATC GAGTTTGCCA AACATCTGGT AGACCAGGGC GTGGACGCCG TCGACGCCGC CGTGCAAGCG GCTCGCCTGC GCCTGCGGCC GATCGTGATG ACTTCGCTGG CGTTCATCCT CGGCGTGGTG CCCCTGGCCA TCGCCAGCGG CGCAAGCTCT GCCAGCCAGC AAGCGATTGG CACCGGGGTG ATCGGCGGCA TGCTCAGCGC CACGCTGGCA GTGGTGTTCG TGCCGGTGTT CTTCGTGGTG GTGATGCGCC TGTCCCGGCG ACGCCAGGCG CATGACAGCG ACGGGCAACC CGTGCCCCGC GAAAGCTGA
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Protein sequence | MPQFFIDRPV FAWVVALFIL LAGALAIPQL PVAQYPNVAP PQVEIYAVYP GASAATMDES VVSLIEQELN GADNLLYFES QSSLGSATIT ATFAPGTHPD LAQVDVQNRL KVVESRLPRP VTQQGLQVEK VSTGFLLLAT LTSEDGKLDE TALSDILARN VMDEIRRLKG VGKAQLYGSE RAMRIWIDPR KLIGFNLTPN DVAEAIAAQN AQVAPGSIGD LPSRSTQEIT ANVVVKGQLS SPEAFAAIVL RANPDGSTVT IGDVARVEIG AQEYQYGTRL NGKPATAFSV QLSPGANAME TATLVRAKMQ DLARYFPEGV KYDIPYDTSP FVKVSIEQVI NTLFEAMLLV FAVMFLFLQN LRYTLIPTLV VPVALMGTFA VMLAMGFSVN VLTLFGMVLA IGILVDDAIV VVENVERIMA EEGLPPKDAT RKAMGQISGA IVGITLVLVA VFLPMAFMQG SVGVIYQQFS LSMAVSILFS AFLALSLTPA LCATLLKPVA KGEHHERKGF FGWFNRRFER MSNGYQRWVV QALKRSGRYL LVYAVLLAVL GYGFSQLPTA FLPTEDQGYT ITDIQLPPGA SRMRTEQVAA QIEAHNAEEP GVGNTTLILG FSFSGSGQNA ALAFTTLKDW SERGADDSAQ SIADRATMAF TQLKDAIAYS VLPPPIDGLG ESTGFEFRLQ DRGGMGHAEL MAARDQLLES ASKSKVLTNV REASLAESPQ VQLEIDRRQA NALGVSFADI GTVLDVAVGS SYVNDFPNQG RMQRVVVQAE GDQRSQVEDL LNIHVRNDSG KMVPLGAFVQ ARWVSGPVQL TRYNGYPAVS ISGEPAAGYS SGEAMAEVER LVAQLPAGTG LEWTGLSLQE RLSGSQAPLL MALSLLVVFL CLAALYESWS IPTAVLLVVP LGVLGAVLAV TLRGMPNDVF FKVGLITLIG LSAKNAILII EFAKHLVDQG VDAVDAAVQA ARLRLRPIVM TSLAFILGVV PLAIASGASS ASQQAIGTGV IGGMLSATLA VVFVPVFFVV VMRLSRRRQA HDSDGQPVPR ES
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