Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2293 |
Symbol | |
ID | 5195100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2611208 |
End bp | 2613073 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640586750 |
Product | type II and III secretion system protein |
Protein accession | YP_001267616 |
Protein GI | 148547514 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.932026 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCGT CAAAGCTGTG CAAGCCTGCT CCGTTTCTGC TCGTGGCGCT GTGCGTGGCC ATTGCCGGTT GCGGCTCCAG TGCGGTTCGC CAGGACAGCG ACCAGTTGAT GAAAGAGGGC CAGTACGAGG CCGGCATCGC CCGCCTGGAA GAGGCCCTGC GCGACGACCC GCGTGACACA GAGCTGAATA TCGCCCTGGC CCACAGCCGC CAGGCGGCAG TCGAGGCCCT GATTAGCCAG GCCGACAGCG ACCGCGTCCG CCATGACTTC GCCAATGCCC GCATGGGCTA TGGCCGGGTG CTCACCCTGG AGCCGAACAA CCGCCGCGCC CAGGATGGCA TTCGCCAGCT GGAGCTGATC CGCACCCTGG ACGATCGCGT AGCGCTTGGC CAGGCGGCGC TGCGCCAGGG CGACCTGTTC GGTGCCGAAC GTTACATGCG CGAAGTCTTG CGTCTGGACC CGCAGAACCA GAAGGGCATA ACCCTGCGCA GCGACATCGA AAACGTGCAG GCACGCACCG CGCAGCCGTA CCCGCAATTG CGCAGCAAGC TCGAGCGGCC GGTCACCCTG GAGTTTCGCG ATGCCAACCT GAAGACCATC TTCGAAGTGC TGTCGCAGGT GGCCGGCATC AACTTCATCT TCGACAAGGA CCTGCGCCCG GACATGAAAG CCACCATCTT CGTGCGCGAG GTGCGCATCG AGGACGCGAT AGCGCTGCTG CTGGAACAAA ACCAGCTGCG CCAGAAGATC GTCAACGACA ACACCGTCAT GGTCTACCCC GATTCGCCGC AGAAGACCAA GGACTACCAG GAACTGGTCA TGCGTACGTT CTACCTGACC AGCATCGACG CCAATACCGC GTTGAACATG GTCAAGACCA TGCTCAAGAC CCGCGACGTG TTCGTTGACG AGCGCCTCAA CACCCTGACC ATGCGCGACA CGTCGGACGC GGTGCGCATG GCCGAGAAGC TGCTGCAGTC GCAGGACCAG TCCAACCCCG AGGTGGTGCT GGAAGTGGAG GTGATGGAGG TGGCCACCTC GCGCATCCTC GACCTTGGCC TGCAATGGCC GAACACCTTC GGCGTGCTGA GCGACGATGG CAACCCGGTC AGCGTGCTCG ACCAGCTCAA GGGCATCAGT TCCAGCCGCA TCAGCATTGC GCCGGCGCCG CAGGCCAAGA TCAACGCCCA GGACAAGGAC ATCAACACCC TGGCCAGCCC GGTGATCCGC GTCAGCAACC GCGAGCAAGC GCGCATCCAC ATCGGCCAGC GGGTACCGAT CATCAGCGCC ACCTCGGTGC CATCGACCCA AGGGCCGGTC ATTACCGAGA GCGTCACCTA CCTGGACGTC GGCCTGAAGC TTGAAGTGCA GCCCACCGTG CACCTGAACA ACGAAGTGGC GATCAAGGTG GCGCTCGAGG TCAGCAACGC CACCCCGCTG GAGGCCACCC GCCAGGGCAC CATCCCGGTC CAGGTCGACA CCCGCAACGC GCAGACCAGC CTGCGCCTGC ATGACGGCGA AACCCAGGTG CTGGCCGGCC TGGTGCGCAA CGACCACAAC GCCAGTGGCA ACAAGATTCC CGGCCTTGGC GATATCCCGG GCCTGGGCCG GCTGTTCGGC AGCAACAAGG ACGACATGAG CAAGAGTGAG CTGGTGCTGG CGATCACCCC GCGCATCGTA CGTAACCTGC CGTACCAGAG CCCGTCGGAC ATGGAGTTTT CCACGGGCAC CGAGTCGGCC ATGCAGGTGC GCCAGATGGC GCCACTGCCG CCGATGGACG TACCCGGTAA TGCGCCGACC ACCGATGAAC CGGTCGTGGA CAGCCAGATG GCGGTCGCCC CGGTCAACGG GAGCCCACGG CCATGA
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Protein sequence | MKSSKLCKPA PFLLVALCVA IAGCGSSAVR QDSDQLMKEG QYEAGIARLE EALRDDPRDT ELNIALAHSR QAAVEALISQ ADSDRVRHDF ANARMGYGRV LTLEPNNRRA QDGIRQLELI RTLDDRVALG QAALRQGDLF GAERYMREVL RLDPQNQKGI TLRSDIENVQ ARTAQPYPQL RSKLERPVTL EFRDANLKTI FEVLSQVAGI NFIFDKDLRP DMKATIFVRE VRIEDAIALL LEQNQLRQKI VNDNTVMVYP DSPQKTKDYQ ELVMRTFYLT SIDANTALNM VKTMLKTRDV FVDERLNTLT MRDTSDAVRM AEKLLQSQDQ SNPEVVLEVE VMEVATSRIL DLGLQWPNTF GVLSDDGNPV SVLDQLKGIS SSRISIAPAP QAKINAQDKD INTLASPVIR VSNREQARIH IGQRVPIISA TSVPSTQGPV ITESVTYLDV GLKLEVQPTV HLNNEVAIKV ALEVSNATPL EATRQGTIPV QVDTRNAQTS LRLHDGETQV LAGLVRNDHN ASGNKIPGLG DIPGLGRLFG SNKDDMSKSE LVLAITPRIV RNLPYQSPSD MEFSTGTESA MQVRQMAPLP PMDVPGNAPT TDEPVVDSQM AVAPVNGSPR P
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