Gene Pput_2226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2226 
Symbol 
ID5191308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2532485 
End bp2534020 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content61% 
IMG OID640586683 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001267549 
Protein GI148547447 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACA ACGCCGCTGC CCAGTTCACG CCGCCAAGTC TGCTGCTGAC CACCATCGGC 
CTATCGCTCG CGACGTTCAT GCAGGTGCTG GACACCACCA TCGCCAACGT GGCCCTGCCG
ACCATTTCCG GCAACCTGGG GGTGAGCTAC GAGCAAGGCA CCTGGGTCAT CACCTCGTTC
GCGGTGAGCA ACGCTATCGC CTTGCCGCTG ACCGGCTGGC TGAGCCGGCG CTTTGGTGAA
GTGAAACTGT TCATCTGGGC CACGCTGCTG TTCGTGCTGG CTTCGTTCCT GTGCGGTATT
GCCCAGTCGA TGCCCGAGCT GGTCGGGTTT CGCGTCTTGC AGGGTGTGGT CGCCGGGCCG
CTTTACCCGA TGACGCAGAC CCTGCTGATT GCTGTCTATC CCCCGGCAAA ACGGGGGATG
GCACTGGCGC TGCTGGCGAT GGTCACGGTG GTGGCGCCGA TTGCCGGGCC GATTCTTGGG
GGCTGGATTA CCGATAGCTA CAGCTGGCCA TGGATCTTCT TCATCAACGT GCCCATCGGC
CTGTTCGCTG CTGCCGTGGT GCGCCAGCAG ATGCGTACGC GCCCGGTGGT CACCAGCCGC
CAGCCGATGG ATTACATTGG CCTGCTGACC CTCATTATCG GCGTCGGGGC CTTGCAGGTA
GTGCTGGACA AGGGCAACGA TCTGGACTGG TTCGAGTCGT CGTTCATCAT TGTCGGCAGC
CTGGTTTCGT TGGTGTTCCT GGCGGTATTC GTGATCTGGG AACTGACCGA CCGGCACCCG
GTGGTCAACT TGCGTCTGTT TGTGCACCGC AACTTCCGCA TTGGCACCAT TGTGCTGGTC
GGGGGGTATG CCGGGTTCTT CGGTATCAAC CTGATCCTGC CGCAGTGGTT GCAGACGCAG
ATGGGCTATA CCGCGACTTG GGCGGGCCTG GCGGTGGCGC CGATCGGTTT GCTGCCGGTG
ATCATGTCGC CGTTCGTGGG CAAATATGCG CACCGTTTCG ACCTGCGGGT GCTCGCTGGG
TTGGCGTTCC TGGCGATTGG CACCAGTTGC TACATGCGTG CCGGTTTCAC CAGCGAGGTG
GACTTCCAGC ACGTGGCCTT GGTGCAGTTG TTCATGGGGA TTGGCGTGGC GTTGTTCTTC
ATGCCGACCT TGAGCATTCT GCTGTCTGAC CTGCCGCCGC ACCAGATTGC CGACGGTTCG
GGGCTGGCGA CTTTTCTGCG AACCTTGGGC GGGAGTTTTG CGGCTTCGTT GACTACCTGG
ATCTGGATTC GTCGGGCGGA TCAGCACCAT GCCTACCTGA GCGAGCACAT CAGCCAGTTC
GACCCGACGA CGCGGCATAC CCTTGAGCAG TTGGGCGGGG CCAGTCCGCA GAGTTATGCG
CAGTTGGAGC AGATACTCAA TGGGCAGGCT TACATGATGT CGACGGTTGA TTACTTCACC
TTGATGAGCT GGGTGTTTGC CGGGTTGATT CTGCTGGTGT GGTTCGCCAA GCCACCCTTT
ACGGCCAAGG CGGGCCCGGC ATCGGCGGGG CATTGA
 
Protein sequence
MSNNAAAQFT PPSLLLTTIG LSLATFMQVL DTTIANVALP TISGNLGVSY EQGTWVITSF 
AVSNAIALPL TGWLSRRFGE VKLFIWATLL FVLASFLCGI AQSMPELVGF RVLQGVVAGP
LYPMTQTLLI AVYPPAKRGM ALALLAMVTV VAPIAGPILG GWITDSYSWP WIFFINVPIG
LFAAAVVRQQ MRTRPVVTSR QPMDYIGLLT LIIGVGALQV VLDKGNDLDW FESSFIIVGS
LVSLVFLAVF VIWELTDRHP VVNLRLFVHR NFRIGTIVLV GGYAGFFGIN LILPQWLQTQ
MGYTATWAGL AVAPIGLLPV IMSPFVGKYA HRFDLRVLAG LAFLAIGTSC YMRAGFTSEV
DFQHVALVQL FMGIGVALFF MPTLSILLSD LPPHQIADGS GLATFLRTLG GSFAASLTTW
IWIRRADQHH AYLSEHISQF DPTTRHTLEQ LGGASPQSYA QLEQILNGQA YMMSTVDYFT
LMSWVFAGLI LLVWFAKPPF TAKAGPASAG H