| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2117 |
|---|
| Symbol | |
|---|
| ID | 5192610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2396601 |
|---|
| End bp | 2398769 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640586574 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001267440 |
|---|
| Protein GI | 148547338 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAGCC AATCTGATTT ACGCTACAGC TTTGAACCAC TCGTGGGCAA CACTGAGTTC
GAAGTGGTGT CGTTCAAGCT CAAGGAGGCG CTCAGCCAAC CGTTCACGTT GACCCTGGAC
CTCGTCAGCT TCGAACACGA TGTCGACTTC GGCCACCTGC TCGACAAACC CGTGCTGTTC
ACCATCTGGG ACGGTGGCCG CCCCGTACGC TACGTACATG GCCTGGTCAG CAGCTTCAGC
CAGGGCGAGA GTGGCTTCTA CCGCACTTAC TACCACGTAT TGGTCGAACC GCAACTGGCC
CGCGCCAGGC TGCGCTCGAA CTGGCGCATC TTCCAGCACA AGACCGTGCC GCAAATTCTT
GAACTGATGC TCAAGCGCCA GGGCATCGAC CAGTACGAAC TACGCGCCAG CCTGGACCAC
CAAGTGCGCG AATTCTGCGT ACAAGCCGGC GAAACCGACC TCGACTTCAT CGCCCGCCTG
ACAGCCGAAG AAGGCTTCGT CTACCGCTTC GAGCACAGTG AGAAACGCCA TAAGCTGATC
ATCACCGACA GACTGCAGTT ACTCGGTCTG ATAAGTCACG GTGCCATCAA ACACGAGGAC
GACGCCGGAG GCTTCTACCG TGAGCGTGAA CCGTCAGCCC CAGCCACCGT GCTGTACCAT
TCCAGCCACG GCGGCGACCA GCCTCAACCG TGCCTACGGC GCTTGCGCTA CAGCGAACAG
GTGCGTACTG CACGGCAGGT TCAACGCGAC TACACCTTCA CCCACCCGGC CTATCGTCAG
GAACACAGGG CCTCGGGCCC GTATCTTGAG CACCAGTCCA CGGACTATGA GTGCTTCGAC
TACCCCGGCC GTTACAAACG CGATGCCGTT GGCAAGCCGT TCACCGAAAA CCGCATCACC
GGCTTGCGCC ATGACGTGCG TATTGCCCAA GTGCAAGGCG ACGATGTGCG CTTGCAACCA
GGCCTGACCT TCACCCTGAC AGGCCACCCG CGCGAAGACC TGAATGTGCA TTGGCGGGTC
AGCACGGTTC GCCACGAAGG CAGCCAGTTC ACCAGCCTGC AGGAAGAAGC TGCCGGGGCC
GACCAGGGCA CACGTTACGA GCAAAAGGCG GTACTGGTGC CAGGCAGAAC CGAATGGCGC
CCAGCCCCGT TGCCCAAACC ACGCGTTGAC GGCCCGCACA TGGCCACCGT GGTGGGGCCG
CCCGGTGAAG AGATCTACTG CGACGAATGG GGCCGGGTCA AGGTCAGCTT CCCCTGGGAC
AGAGAAAGCC AGGACAACGC GTTCAGTTCC TGCTGGGTAC GCGTATCCCA AGGCTGGGCC
GGCGGCAGCT GGGGCTCGAT GGCCATCCCA CGGATTGGCC AGGACGTGAT CATCCACTAC
GTCAACGGCG ACCCCGACCA GCCGATGATC ACCGGCCGTA CTTACTGCGG TAACCAGCTG
CCACCGTACG ACCTTCCCCG TCACAAGACC CGCATGACCA TCAAGAGCCA GACCCACAAG
GGCGATGGCT TCAACGAGCT GCGCTTCGAG GACGAACTGG GCCAGGAGGA AGTGTTCATT
CATGCCCAGA GGGACCAGAA CAATGTGGTC AAGCACGATG AGACTACGCA GGTCGGCAAT
GACCGCAAAG AGCAGGTCGA TCACGACGAA TCGATCCTGA TCGGCCACGA CCGTACGGAA
ACGGTTGGCA ATGACGAGCA CATCACCATC GGGCAGGACG CCGCGCTCGA CATCGGCAGA
AACCACACGA TCAGGATCGC CAAGGACCGT GTCGAAAACA TCGGCAATCA CCGTCACGAC
CAGATCGCCG CCAATCACCA CACCCGTATC GGTGGCAACT TCGAACAACG GGTCGAAGGG
CATGCCGAGC TGGAAGCCCG TGGGGATATC CGCAGACGTA CTCGCCGTTA TGAACTTCGA
GCCTCGGAAG CCGTGGTCAT CCAAGGCCCT GGTGGCTCCA TTCGAATCGA CGAAACGGGC
ATCACCCTGG ACAGCCCGAC GATTCGCATC ACCGGCCAGA TGCTCAAGTC GGCAAATGGG
ACGACAAGCC CCTTTTCCAT CAGCAGTGCA CCGAACACCG GCAAGCCTCT GGAGCGCTTG
TGTGGGCGCC GCCCTGATGG TACCTGCCCC CTGCCCGATT GCCGCTGTAT CCGAGGGCCA
GGCCAATGA
|
|---|
| Protein sequence | MPSQSDLRYS FEPLVGNTEF EVVSFKLKEA LSQPFTLTLD LVSFEHDVDF GHLLDKPVLF
TIWDGGRPVR YVHGLVSSFS QGESGFYRTY YHVLVEPQLA RARLRSNWRI FQHKTVPQIL
ELMLKRQGID QYELRASLDH QVREFCVQAG ETDLDFIARL TAEEGFVYRF EHSEKRHKLI
ITDRLQLLGL ISHGAIKHED DAGGFYRERE PSAPATVLYH SSHGGDQPQP CLRRLRYSEQ
VRTARQVQRD YTFTHPAYRQ EHRASGPYLE HQSTDYECFD YPGRYKRDAV GKPFTENRIT
GLRHDVRIAQ VQGDDVRLQP GLTFTLTGHP REDLNVHWRV STVRHEGSQF TSLQEEAAGA
DQGTRYEQKA VLVPGRTEWR PAPLPKPRVD GPHMATVVGP PGEEIYCDEW GRVKVSFPWD
RESQDNAFSS CWVRVSQGWA GGSWGSMAIP RIGQDVIIHY VNGDPDQPMI TGRTYCGNQL
PPYDLPRHKT RMTIKSQTHK GDGFNELRFE DELGQEEVFI HAQRDQNNVV KHDETTQVGN
DRKEQVDHDE SILIGHDRTE TVGNDEHITI GQDAALDIGR NHTIRIAKDR VENIGNHRHD
QIAANHHTRI GGNFEQRVEG HAELEARGDI RRRTRRYELR ASEAVVIQGP GGSIRIDETG
ITLDSPTIRI TGQMLKSANG TTSPFSISSA PNTGKPLERL CGRRPDGTCP LPDCRCIRGP
GQ
|
|---|
| |