| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2102 |
|---|
| Symbol | |
|---|
| ID | 5193134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2377740 |
|---|
| End bp | 2378390 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586559 |
|---|
| Product | SH3 type 3 domain-containing protein |
|---|
| Protein accession | YP_001267425 |
|---|
| Protein GI | 148547323 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3103] SH3 domain protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.106073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.494507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATT CCCGCCCAAA TGCTTCCGCC CTCCCTGCCC TGCGCATCGG CCTGATTGCC
GCCCTGGTGG GCCTTGCCGC CCCCGTGCAC GCCGAAGAGC CTGCCAGCGA CGCACGCTGG
GTCAGTGACA GCCTGAGCAC CTACGTGCGC AGCGGCCCGA CCGACGGGCA CCGCATTGTC
GGCACGCTCA AGTCCGGGCA GAAGCTGACC CTGCTCGGCA GCCAGGGCAA TTACAGCCAG
GTGCGCGGGC AGAACGGCGA TGTGGTGTGG ATCCTCAGCA ACGACCTGCA GGCAGTGCCC
GGGCAGAACG AGCGCCTGCC GTTGCTCGAT GCCCAGGTCA CCGAACTGAC CGGGCAGTTG
AAGACCATCG ACGACAGCTG GAAGAACCGC GTACAGGGCA TGCAGGAAAC GCTTGATTCG
CGCAAGCAAC TGATTGACGA GTTGGAGGCA CGCAACAAGG CACTGAACGA GCAGCTCGAT
CAGAGCCAGT CGGACCTGCG CGATACCCAG GCACGCCTGG GGGATGAGAA CAAGCAGGTG
ATGATGCGCT ACATGGTGTA TGGCGGCAGC ATTGCCGGTG CAGGCTTGCT GGCGGGGCTG
ATCCTGCCGG CACTGACCCG TGGGCGCAAA AAGAACGATC GCTGGTTCTG A
|
|---|
| Protein sequence | MPDSRPNASA LPALRIGLIA ALVGLAAPVH AEEPASDARW VSDSLSTYVR SGPTDGHRIV
GTLKSGQKLT LLGSQGNYSQ VRGQNGDVVW ILSNDLQAVP GQNERLPLLD AQVTELTGQL
KTIDDSWKNR VQGMQETLDS RKQLIDELEA RNKALNEQLD QSQSDLRDTQ ARLGDENKQV
MMRYMVYGGS IAGAGLLAGL ILPALTRGRK KNDRWF
|
|---|
| |