| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2079 |
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| Symbol | |
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| ID | 5193226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2354876 |
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| End bp | 2357059 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640586537 |
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| Product | GAF sensor hybrid histidine kinase |
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| Protein accession | YP_001267403 |
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| Protein GI | 148547301 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.79077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGAT GGCTAGATGG CGGCGGGCTA ATGGCCGAAC GCATCCGCAA CCACGACTGG
GCCACCACCC CACTGGGCCC GCTGGAACAT TGGCCCGACG CCCTGAAAAC CACGATGGCT
CTGTGCCTGG CCTCGCGCTT TCCGCAAGCC GTGCTCTGGG GCCCGGACTT GATCACCCTG
TACAACGATG CCTTCACCCC GATTCTCGGT CGCAAGCCCC TGGCCTTGGG CATCCCCTTC
CGCGACGTGT GGCACGAAGC CTGGGATGAA ATCAGCAGCA TGGCGGCCCG CGCGTTGGCC
GGCGAAGCGG TTTACATCGA AGACTTCCCG CTGATGATCG ACCGCAACGG CGGCCTGGAG
CGGGCCTATT TCACCTTCTG CTACAGCCCG ATTCGCGGCC ATGATGGCGA AATTCTGGGC
ATGCTCGACA CGGTCACCGA AACCACCGCC AGTGTGCTCA CCAACCAGCG CCTGAACTTT
CTCGATACCC TCGGGCGAGC CGTGACCGAG GCGACCGACC CGGACCAGAT CATGGCCATC
ACCACCCGCA TGCTGGTCGA GCACCTTGGC TTGTCCAGCT GCGCGTATGC GGTGATGGAC
CCCGACGAGG ACGGTTTCAC CATTTGCGGC GATGCGGTGA CACCCGGCTC ACCACGCCTG
GTCGGCCACT ATCACCTGCA TGACTTCGGC CGCCTGGCGG TCAGCCGCCT GCGCAGCGGC
CTGGCTCTGG TGATCAACGA CAACCTGCGC GAACTGGCCA CTGACGAGGC GGCGACTTTT
CAGGCCATCG GCATTACGGC CACCATTTGC ATGCCACTGA TCAAGGGTGG CAGGCTGACC
GCGCTGATGG CGATTCACGA CCGCGTACCC CGAGTATGGA CCGACTACGA GCAAGCACTG
ATCAGCGAAG TGACCGAGCG ATGCTGGGCG CACATACAGC GGGCCCAGGC CCATGCCGAA
GTGCGCGAAG CGATGGCGGC CCTTGAAGCG CTCAACACGA CCTTGGAACA TCGCGTAGAA
GAACGCACCA CTCAGCTGCT GCACACCGAG GCCGTGCTGC GCCAAGCCCA GAAGCTGGAA
GCCATTGGCC AGCTGACCGG CGGCGTAGCC CACGACTTCA ATAACCTGCT GACCATCATC
CGCTCGTCGC TGCACTTCCT GCAGCGCCCC AACCTGGCCG AAGAGCGCCG CGAGCGCTAC
CTCAAGACCA TGTCCGACAC GGTCGACCGT GGTGCCAAGC TGACCGGCCA GCTACTGGCC
TTCGCCCGAC GCCAGGCCCT CAGCCCACAG GTGTTCGAAG CCGGGCCACG GCTGGAAGCC
ATGGCCGACA TGCTCGACAC CGTCACTGGC GCGCGCATCC GGGTCGAGCT GCAGCTACCC
CAAGCGCCCT GCCACATCCG CGCCGACCTC AGCCAGTTGG AAACTGCGGT AATCAACCTG
ATGCTCAACG GCCGCGATGC CATGGCTGGC GAAGGTGCCT TGCAGCTGCG CCTGCAGGCC
GACCAGTGCC TGCCGGCCTT GCGCGGTCAG CCTTCACAGC CAGGCCCGTT CGCGGCGATA
TCGGTGAGCG ACAACGGAGT CGGTATTGCC ACCGAGTTGC TGGAGCGCAT CTTCGACCCG
TTCTTCACCA CCAAGGCCCC AGGTGAAGGT ACCGGGCTTG GGTTGTCGCA GGTGTTTGGT
TTCGCCAAGC AATCCGGGGG CGATGTACAG GTGAACAGCA TCCCCGGCCA CGGCACCACC
TTTACCCTGT ATCTGCCGCA GGAGGCACCA ACTGCGGCCT CGCCCGAAGA CGCCTCGGCC
GGCAGCCAGC CACAGGTACA GGGCGAGCGG CGACGAATAC TGGTGGTAGA AGACAATCCC
GACCTGGGCA GTTTCACAGC TCAGCTCCTC GAGGACCACG GCTACCAAAT CAGCTATGCA
CGGTCTGCAG AAGAAGCGCT GGCGCAGTTG ACTGGCCCGG CAGGTGATTT TGATGCGGTG
TTTTCCGATG TGGTCATGCC CGGCATGGGT GGCTTGGCAC TGGCCCGCGA ACTTCGCCGC
CAGCGCCCGC AGTTGCCGGT GATCCTGACT TCGGGCTATA GCGAGGCGAT TGCCGAAGGC
GGGCACCAAG GGTTCACCTT CCTGGCCAAA CCCTACTCGG CAGAACAGGT GTGCCAGATA
CTCGGCAAAG TATTCGGCCA CTGA
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| Protein sequence | MARWLDGGGL MAERIRNHDW ATTPLGPLEH WPDALKTTMA LCLASRFPQA VLWGPDLITL
YNDAFTPILG RKPLALGIPF RDVWHEAWDE ISSMAARALA GEAVYIEDFP LMIDRNGGLE
RAYFTFCYSP IRGHDGEILG MLDTVTETTA SVLTNQRLNF LDTLGRAVTE ATDPDQIMAI
TTRMLVEHLG LSSCAYAVMD PDEDGFTICG DAVTPGSPRL VGHYHLHDFG RLAVSRLRSG
LALVINDNLR ELATDEAATF QAIGITATIC MPLIKGGRLT ALMAIHDRVP RVWTDYEQAL
ISEVTERCWA HIQRAQAHAE VREAMAALEA LNTTLEHRVE ERTTQLLHTE AVLRQAQKLE
AIGQLTGGVA HDFNNLLTII RSSLHFLQRP NLAEERRERY LKTMSDTVDR GAKLTGQLLA
FARRQALSPQ VFEAGPRLEA MADMLDTVTG ARIRVELQLP QAPCHIRADL SQLETAVINL
MLNGRDAMAG EGALQLRLQA DQCLPALRGQ PSQPGPFAAI SVSDNGVGIA TELLERIFDP
FFTTKAPGEG TGLGLSQVFG FAKQSGGDVQ VNSIPGHGTT FTLYLPQEAP TAASPEDASA
GSQPQVQGER RRILVVEDNP DLGSFTAQLL EDHGYQISYA RSAEEALAQL TGPAGDFDAV
FSDVVMPGMG GLALARELRR QRPQLPVILT SGYSEAIAEG GHQGFTFLAK PYSAEQVCQI
LGKVFGH
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