Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1955 |
Symbol | |
ID | 5192928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2225080 |
End bp | 2226105 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640586416 |
Product | extracellular solute-binding protein |
Protein accession | YP_001267282 |
Protein GI | 148547180 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.319397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.247147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGTTAA GCAAACGTGT AACCGCAGTG CTGTCCGCCA GCCTGCTGAC CCTGGCATGT CAGGCCGCCC AGGCCGCCGA CAGCCTCAAC TTCGTCAGCT GGGGCGGTAC GACCCAGGAC GCCCAGAAAG AAGCGTGGGC AGTACCGTTC ACCAAAGCCA CGAACATCAA GGTCGTGCAG GACGGTCCCA CCGACTACGG CAAGCTCAAG GCCATGGTCG AGAGCGGTAA CGTGCAGTGG GACGTGGTCG ACGTCGAAGC CGACTTTGCC CTGCGTGCCG CCAGCGAAGG CCTGCTCGAA CCCCTGGACT TCAACCAGAT CAAGCGCGAC AAGATCGACC CACGCTTCGT CTCTGATCAT GGCGTCGGCT CATTCTTCTT CTCCTTCGTG CTCGGCTACA ACGAAGGCAA GCTCGGGGCC AACAAGCCGG TGGACTGGAC CGCGCTGTTC GACACCAAGG CCTACCCCGG CAAGCGAGCC CTGTACAAAT GGCCCAGCCC CGGCGTGCTG GAACTGGCCC TGCTGGCCGA CGGCGTAGCC CCTGACAAGC TGTACCCGCT GGACCTGGAC CGCGCCTTCA AGAAGCTCGA CACCATCAAG AAAGACATCG TCTGGTGGGG CGGTGGCGCC CAGTCACAGC AGTTGCTGGC CTCGGGTGAA GCCTCGCTCG GCCAGTTCTG GAATGGCCGT GTCTACGCCC TGCAGCAAGA CGGTGCACCG GTGGGTGTGA GCTGGAAGCA GAACCTGGTC ATGGCCGACT TCCTGGTCAT CCCCAAAGGC GCCAAGAACA AGGAAGCGGC CATGAAATTC CTGGCCAACG CCAGCAGCGC CGAAGGCCAG GCCGAATTCG CCAACAAAAC CGCCTATGCG CCGGTCAACG TCGACAGCGT GGCCAAGCTG GACAAGGACC TCGCGCCAAA CCTGCCAACT GCCTACGCCC AGGACCAGGT CACCCTCGAC TTCGCCTACT GGGCCAAGAA CGGTCAAGCT ATCGCGGCCC GCTGGAATGA GTGGTTGGTC AAATGA
|
Protein sequence | MLLSKRVTAV LSASLLTLAC QAAQAADSLN FVSWGGTTQD AQKEAWAVPF TKATNIKVVQ DGPTDYGKLK AMVESGNVQW DVVDVEADFA LRAASEGLLE PLDFNQIKRD KIDPRFVSDH GVGSFFFSFV LGYNEGKLGA NKPVDWTALF DTKAYPGKRA LYKWPSPGVL ELALLADGVA PDKLYPLDLD RAFKKLDTIK KDIVWWGGGA QSQQLLASGE ASLGQFWNGR VYALQQDGAP VGVSWKQNLV MADFLVIPKG AKNKEAAMKF LANASSAEGQ AEFANKTAYA PVNVDSVAKL DKDLAPNLPT AYAQDQVTLD FAYWAKNGQA IAARWNEWLV K
|
| |