| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1872 |
|---|
| Symbol | |
|---|
| ID | 5190532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2144419 |
|---|
| End bp | 2146584 |
|---|
| Gene Length | 2166 bp |
|---|
| Protein Length | 721 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640586337 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001267205 |
|---|
| Protein GI | 148547103 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.163736 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTTT CCAGTGGTTC GATGCAGTTA TCGTCGAGTG AAAAGGGTTG GCTGCCGTGG
TTTGGCAAAA CCGGCAAATT CAGCATGGGC TGGGCGTGCC GCCTTAATCG GGCCAGTTAC
CCGCAGGTCG AGCAAACGTT CGAAGCCATC GCCCAGACCC GCGTGCAGTT GCTGCATGAG
TGGGTGCGCG AGCAGTGGGA ACACCTGGCC GACCTGGCCG AGCAGGTGGC GCCCGGGCTC
GCTCAAGTCG ATAGCGCAAT GTTGCGCAAC ACGCTGGCCC AGGCTGAGGA CTTTTCCGAG
CTGTTTGTCG TCGATGCCCA CGGCATCGTC ATCGCTTCGA CCTGGCCCCA GCGTGGCACG
CCACGCATCG AGCACTTGGC AGCCCTGGCG CAAGGGCTGA AAGCACCGTT TCTGCACGGG
CCCTACAGCG ACCCGCTGAC CTTGCAGGTC GGCCCGTCTT CCTCGCGCTT CCACGATGAA
GTCACGTTGA TGTTCTACCA GCCCCTGATG CACGAGAGCA AAGTGCTAGG TTGTTTGTGT
GGGCGGGTGC CCAACGATGT GCTGGGTGAC CTGATCCAGC GCGAGGCAGG GCACATTTAC
CCCGAGTCGG GCGACAACTA CCTGTTCATG GCGCAATCGC GCTTCGACCC TGGCATACAG
CCCGGTACCG CGTTGTCCCG TTCGCGCTTC GAGGACGCCA CCTTCACCCA TGGCGAAAAC
CTCAAGAACG GTGTGCACAC CCCCTGGACC ACCGTGCAGG TCCAGCGTCA TACCGAGCTG
GAGCTTCGTT TCACCGACCC TTCCACGCGG GAACTGCACC CTGGCGTGAG GGAGACGATC
AGGCGGGGTG CCAACCTGTT CGTGACCTAC CCCGGCTATT CCGACTACCG TCATGTGCCA
GTGGTGGGCA AGGGCGTGAC CTTCCAGTTG CCAGGCTCAC CCGACCGCTG GGGCATGATG
TGCGAGGCAG ATCTGGAGGA GGTCTATCGC CGGCGTTCGC TGAGCTACGG GTTGATGAAA
CCCTATGTGG CGATCATGGC GGGGCTGTTC GGCTGCAATT ACTGGGTGCA GCACTATGCA
GGCCTGCCGC AAGGACTGAC TGACGCGATC GAGGCCTTGA GCATGCTGGG CGCCACCTTG
TTGTTCGGCG TGCTCGGGCC CAAGCGCCTG GCCGCCAGGT TGAATGGCAT GAGCAGTGTG
CTGTGCACCA TCGCCGAGGG TGAAGGCAAC CTGCGCCAGC GCCTGGATAC CAGTACCTTG
GCCAATGATG AGAGCGGCGA CATGGCGCGC TGGATCAACA GCTTCATCGA CCGCCTGGAC
ACGGTGGTCG GGCAGGTGGT CAAGGCCAGT CGCACGGTTG GCAGCACCAA CCAGATGATG
CTCGGGCGCA GCCAGGAGGC CAGCGTAAGC TCCGCCGACG TGGCCGACGC CGTGCACCAG
ATGATGATCA TCATGGAAGA GCAACTCGGC GAACTGCAGC AGGCCTCGGT CAGCGCCGAG
CAGATGAAAC AGGCCATGGA CGAAGTGGTC AGCCGCGCAC GCGCGCAGTA CCAGGCGGTG
CAGGCGGGCA CCCAGTCGAT CCGCGATGTG GTGGCGCGCT CATCATCCAG CGTGCAACGG
CTCGACAGCC GCATGGTCGA GATCGACAAC ATCACCGGGT TGATCAGCGA AATCACCAAC
CAGACCAACC TGCTGGCGCT CAATGCCGCT ATCGAGGCGG CGCGGGCCGG GGAGCATGGT
CGTGGCTTCG CGGTGGTGGC CGACGAGGTG CGCAGCCTGG CCGCACGCAC CTCGCGTGCC
GCCGACGACA TTCGCCATAT GGTCGAGAGC CTGCAGGGCG AAACCCGGCA GGCGGTAAGC
TTCATGGAAC AGGGCGTGCA GGATGTCGAC AACAGCCTGC GCCTGGCGGA GGACGCGTCT
TCCGAAAATG TGCAACTGCA CCAGGCGGTG GAGGGCATGT TCGCCATCAT CCAGCAGCTC
AACCGTCGCA GCGTGGAATA CGGCAAGACG ATCGAGCAGG TCAACCAGTC CTCCAGCGAG
ATGCGCCAGA CCGCCCTGGT GCTGCAAAGC AGTGCGCAGA AGGTGAAGGT GGATGCTGGC
AAGTTGCAGA AGCTGGTGGG GCAGTTCGAA GTCAGCGATG ATGGCGAACG AGGCGTCGCT
GCTTGA
|
|---|
| Protein sequence | MSLSSGSMQL SSSEKGWLPW FGKTGKFSMG WACRLNRASY PQVEQTFEAI AQTRVQLLHE
WVREQWEHLA DLAEQVAPGL AQVDSAMLRN TLAQAEDFSE LFVVDAHGIV IASTWPQRGT
PRIEHLAALA QGLKAPFLHG PYSDPLTLQV GPSSSRFHDE VTLMFYQPLM HESKVLGCLC
GRVPNDVLGD LIQREAGHIY PESGDNYLFM AQSRFDPGIQ PGTALSRSRF EDATFTHGEN
LKNGVHTPWT TVQVQRHTEL ELRFTDPSTR ELHPGVRETI RRGANLFVTY PGYSDYRHVP
VVGKGVTFQL PGSPDRWGMM CEADLEEVYR RRSLSYGLMK PYVAIMAGLF GCNYWVQHYA
GLPQGLTDAI EALSMLGATL LFGVLGPKRL AARLNGMSSV LCTIAEGEGN LRQRLDTSTL
ANDESGDMAR WINSFIDRLD TVVGQVVKAS RTVGSTNQMM LGRSQEASVS SADVADAVHQ
MMIIMEEQLG ELQQASVSAE QMKQAMDEVV SRARAQYQAV QAGTQSIRDV VARSSSSVQR
LDSRMVEIDN ITGLISEITN QTNLLALNAA IEAARAGEHG RGFAVVADEV RSLAARTSRA
ADDIRHMVES LQGETRQAVS FMEQGVQDVD NSLRLAEDAS SENVQLHQAV EGMFAIIQQL
NRRSVEYGKT IEQVNQSSSE MRQTALVLQS SAQKVKVDAG KLQKLVGQFE VSDDGERGVA
A
|
|---|
| |