| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1819 |
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| Symbol | mnmA |
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| ID | 5193839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2088716 |
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| End bp | 2089840 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640586287 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_001267156 |
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| Protein GI | 148547054 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.12881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCC CAGTACTTAA AGACCCCGCC AAGACCCGCG TCATCGTCGG CATGTCCGGC
GGCGTGGACT CTTCCGTCTC AGCCCTTCTG CTCATCGAGC AGGGCTACCA GGTGGAAGGG
CTGTTCATGA AGAACTGGGA AGAGGACGAC GGCACCGAAT ACTGCACCGC CCGTGAAGAC
CTGGCCGACG CCCAGGCCGT GTGCGACCGT ATCGGCATCA AGCTGCACAC CGCCAACTTC
GCCGCCGAAT ACTGGGACAA CGTGTTCGAG CACTTCCTTG AAGAATACAA GGCCGGCCGC
ACACCCAACC CCGACATCCT CTGCAACCGC GAAATCAAGT TCAAGGCGTT CCTCGACTAC
GCCCTGTCGC TGGGTGCCGA CCTGATCGCC ACCGGCCACT ATGTGCGCCG CCGCGATACT
GGCGCGCTCA CCGAACTGCT CAAGGGCCTG GACCCGAACA AGGACCAGAG CTACTTCCTG
CACGCCGTCG GCGGCCAGGA AATCGCCCGC ACACTGTTCC CGGTCGGCGA ACTGGAAAAG
CCCGAAGTAC GCGCCATCGC CGAAAAACAC GGCCTGGCCA CCGCCAAGAA GAAAGATTCC
ACCGGCATTT GTTTCATTGG CGAGCGCCGC TTCAGCGACT TCCTCAAGCA GTACCTGCCG
GCCCAGCCGG GCGACATTGA AACCACCGAA GGTGAAGTGA TCGGCCGCCA CCATGGCCTG
ATGTACCACA CCATCGGCCA GCGCCAGGGC CTGGGCATTG GCGGCCTGAA AGATGCCAGT
GACGAGCCGT GGTACGTGCT GCACAAGGAC CTGGCCCGCA ACGTGCTGGT GGTCGGCCAG
GGCAACGAGC ACCCATGGCT GTTCTCCCGC GCCCTGCTGG CCTCGGACAT TTTCTGGGTC
AACCCGGTCG ACCTCGGCAG CCCACGCCAG CTGACTGCCA AGGTGCGCTA CCGCCAGAGC
GACCAGCGAT GCACCCTGGA ACGCACCGCC AGCGGCTACC GCGCCGTGTT CGACGAGCCT
CAGCGCGCCG TGACGCCGGG CCAGTCCGTG GTGTTCTACG ACGGCGAAGT GTGCCTGGGC
GGCGGCGTGA TCGAGGCTGC CGAGCCGTGG AGCCCGCGCG CATGA
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| Protein sequence | MTSPVLKDPA KTRVIVGMSG GVDSSVSALL LIEQGYQVEG LFMKNWEEDD GTEYCTARED
LADAQAVCDR IGIKLHTANF AAEYWDNVFE HFLEEYKAGR TPNPDILCNR EIKFKAFLDY
ALSLGADLIA TGHYVRRRDT GALTELLKGL DPNKDQSYFL HAVGGQEIAR TLFPVGELEK
PEVRAIAEKH GLATAKKKDS TGICFIGERR FSDFLKQYLP AQPGDIETTE GEVIGRHHGL
MYHTIGQRQG LGIGGLKDAS DEPWYVLHKD LARNVLVVGQ GNEHPWLFSR ALLASDIFWV
NPVDLGSPRQ LTAKVRYRQS DQRCTLERTA SGYRAVFDEP QRAVTPGQSV VFYDGEVCLG
GGVIEAAEPW SPRA
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