Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1814 |
Symbol | |
ID | 5193946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2082725 |
End bp | 2084686 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640586282 |
Product | DNA topoisomerase III |
Protein accession | YP_001267151 |
Protein GI | 148547049 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.230615 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.182925 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGCCTGT TCCTCTGTGA AAAACCCTCC CAGGCAAAAG ACATTGCCAA AGTGCTCGGC GCCAACCGCA AAGGCGACGG CTGCTGGCAA GGCACCGATA TCTGCGTCAC CTGGTGCATT GGCCACCTGC TGGAAACCGC CCCGCCCGAC AGCTATGACG AACGTTACAA GCGCTGGAAC CTGGCCGACC TGCCGATCAT TCCAGACAAG TGGAAGATGC TGGTAAAGCC CAAGACCGCC AGCCAGTTCA AGGCGGTCAA ACGTCTGCTC GGTGAAGCGC GGGAGCTGGT GATTGCCACC GACGCCGACC GCGAAGGCGA AATGATTGCC CGCGAACTGG TCGAGCACTG CCGCTACCGA GGCCCGGTGC AGCGCCTGTG GCTGTCGGCG CTGGATGACG CCTCCATCCG CAAGGCCCTG GCGCGCCTGC TGCCAGGCCA CGAGACGTTC AACCTGTACC ACTCGGCGCT GGGCCGCTCG CGCGCCGACT GGCTGATCGG CATGAACATG AGCCGGCTGT TCACCTTGCT GGGCCGCCAA TCCGGCTACC AGGGTGTGCT GCCGGTAGGC CGCGTGCAAA CGCCGACCTT GCGCCTGGTG GTCGACCGCG ACCGCAGCAT CGCCAACTTC GTGCCAGTGC CGTTCTGGGC CATCGACGTA CAGCTGGAAC ACGCCGGCCA ACGCTTCAAT GCCCAATGGC GCGCCCCCGA AGACGTCTGC GATGACCAAG GCCGCTGCCT GAAGCAAGAC CTGGCACAGC GGGCCGCCAC CGACATCGGC CATGCCGGCA CTGCCCGAGC GGTAAAGGTA GCGACCGAGC GTGTGCGCGA AGCAGCACCG CTGCCCTTCG ACCTTGGCAC CCTGCAGGAG CTGTGCTCGA AAAAGTTCGG CCTCGGCGCC CAGGAAACCC TCGACATTGC CCAGGCACTG TACGAAACAC ACAAGCTGAT CACCTACCCG CGCAGCGATT GCGGCTATTT GCCACAAAGC CAGCACGCCG AGGCACCCGC CATCCTCGCC GCCCTGCAAC GGGCCGATGC CAGCCTGGCA CCGCTGCAGC CCTACCTGGA GCCGCAACGC CGCTCGCGGG CGTGGAACGA CGCCAAAGTC AGCGCTCACC ATGGCATCAT CCCCACCGCC GCCGCCAGTG ACCCCTCGCG CCTGCCGGCC AAGCACAAGG CCGTGTATAC CCTGATCCGC GCCCGCTATC TGGCGCAGTT CCTGCCCAAC CATGAGTACG ACCGCACCCA GGCCGACTTC GACTGCGCCG GTCATGCGCT GCGTGCTGTG GGCAAGCAGA TCGTCGAGCC GGGCTGGCGC CGCGCCTTGC CCGAGGCGCT CACCCCGGCC AAAGGCCGCG AGGCACCACC GGCCCAGGTG CTGCCGGCGC TTCGCGAAGG CCAGGACTGC AACGTAAACG GCCTGCAACT GAAAGACCTG TGGACCCAGC CACCCAAACC GTTTACCGAA GGCGACCTGA TCAAGGCGAT GAAAAACGTG GCCAAGCTGG TGGATGACCC TCGGCTGAAG CAGAAACTCA AGGAAACCAC CGGCATCGGC ACCGAGGCCA CCCGCGCCAG CATTATCCAG GGTCTGCTCG ACCGCGGTTA CCTGGTAAAG AACGGCAAGG CGCTGTCGGC CACACCTGCG GCCTTCAGCC TGATCGACGC CGTTCCCCGC GCCATTGCCG ATCCCGGCAC CACGGCGATC TGGGAGCAGG CGCTGGACAT GGTGCAAAGC GGCGAGATGA CCCTGGAAGA GTTCGTTGCC CGGCAGTCGG CGTGGATGGG CAAGCTGGTC GAGCGTTGCA GCGGCATGCG CATGACCATC AGCGGGCCAG CGGCCGGGGC GGCCCCGCCC TGGAAGAAGA AACGTCGCGG TGGAGGTGGC AAAAGCAAAG CGGCCGGAAA CAAGGCAACT CCGAGCAAGC CACGGCAGCC GCGGAAAAAG GCAACGTCCT GA
|
Protein sequence | MRLFLCEKPS QAKDIAKVLG ANRKGDGCWQ GTDICVTWCI GHLLETAPPD SYDERYKRWN LADLPIIPDK WKMLVKPKTA SQFKAVKRLL GEARELVIAT DADREGEMIA RELVEHCRYR GPVQRLWLSA LDDASIRKAL ARLLPGHETF NLYHSALGRS RADWLIGMNM SRLFTLLGRQ SGYQGVLPVG RVQTPTLRLV VDRDRSIANF VPVPFWAIDV QLEHAGQRFN AQWRAPEDVC DDQGRCLKQD LAQRAATDIG HAGTARAVKV ATERVREAAP LPFDLGTLQE LCSKKFGLGA QETLDIAQAL YETHKLITYP RSDCGYLPQS QHAEAPAILA ALQRADASLA PLQPYLEPQR RSRAWNDAKV SAHHGIIPTA AASDPSRLPA KHKAVYTLIR ARYLAQFLPN HEYDRTQADF DCAGHALRAV GKQIVEPGWR RALPEALTPA KGREAPPAQV LPALREGQDC NVNGLQLKDL WTQPPKPFTE GDLIKAMKNV AKLVDDPRLK QKLKETTGIG TEATRASIIQ GLLDRGYLVK NGKALSATPA AFSLIDAVPR AIADPGTTAI WEQALDMVQS GEMTLEEFVA RQSAWMGKLV ERCSGMRMTI SGPAAGAAPP WKKKRRGGGG KSKAAGNKAT PSKPRQPRKK ATS
|
| |