Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1681 |
Symbol | |
ID | 5193923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1921846 |
End bp | 1923534 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640586151 |
Product | cyclic peptide transporter |
Protein accession | YP_001267021 |
Protein GI | 148546919 |
COG category | [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACGT CCTTTGATCC GCCTGGAGAA GACTTCCCCA TGATTCGCAA ACCGCTCAGC GCGACCCGCG AGCTTGCCCA GTTGCTCAAG CCGTTCTGGC CCATCGTGCT GGTTTCCATA CTGTTGGGCA TCCTCGGCGG CTTCAGCGTC ACCACGCTGC TGGCCACCAT CAACCGCGCC CTCAACAGCG AAGCAGGGCT GACCCACGCC GTGCTGTGGT TGTTTGCCGG CCTCTGCGTG CTGACCTTGC TCAGCAGCAT CTTCTCCGAC ATGGGCACCA ATTTCGTTGG CCAGAAGATC ATTGCCAAAC TGCGCAAGGA GCTGGGCGAA AAAGTGCTTT CGGCGCCCAT TGAGCAGATC GAGCGCTATC GCAGCCACCG CCTGATACCG GTGCTGACCC ACGATATCGA TACCATCAGC GATTTCTCGT TCGCCTTCGC CCCCCTGACC ATTTCGCTGA CGGTGACGCT GGGCTGCATG GGCTACCTGG CAACATTGTC CGGCCCGCTG TTCCTGCTGA TGCTGCTGGC ATTGGGCGCC GGCATCACCG CCCAGGTCAT CGCCCGCACG CGCGGCATCA AGGGGTTCAA TACCGCCCGC GAGGCCGAGG ACGACCTGCA GAAGCATTAC AACGCCATTG CCCAGGGCGC CAAGGAGCTG CGCATACACC GGCCGCGCCG GTATCGCATG TTCACCCGGC ACATCCAGGG GATCAGCGAG CGGATCAGCG CCATCCAGAT CAAGGCAGTC AACACCTACA TCCTGGCCAA GACGTTCGGC TCGACGCTGT TCTTCATCGT CATCGGCCTG GCCCTGGCCC TGCAGAGCAC CTGGACAAGC GTCGATCAGG CGGCAATGAC CGGCTTCGTG CTGGTGCTGC TGTACATGAA AGGCCCACTG GACCATCTGG TCAGCGTACT GCCGCTGGTC AGCAAGGCAC AGGTGGCATT CCAGCGCATT GCCGAGCTGT CAGAGCAGTT TTCCTCGCCC GAACCGAACC TGCTGCTCGA CGGCCAAGGC GCACCGCGCC AGACCATCGA CAGCCTGGAA CTGCACAATG TGCAGTACGC ATTTCCGGCC GTCGAGGGCA GCACGCCGTT TCGCCTGGGC CCGGTGAACC TCACGATCAA CCAGGGCGAC ATCGTGTTCA TCGTCGGCGA GAACGGTTGT GGCAAGACCA CGCTGATCAA GCTGCTGCTT GGCCTGTATG CGCCGCACAG TGGTGACATC CTGCTGGATG GTCAGCCGGT CTCGGTGCTT GACCGGGATG ACTACCGACA ACTGTTCACC ACCATTTTCG CCGACTACTA CCTGTTCGAC GACGTGGTCC AGGGCGACCA GCAGATTCCC GACGATGCTA CCCAATACCT GCAACGCCTG GAGATCGCGC ACAAGGTCAG CGTACGTGAC GGCGCCTTCA CCACCACCGA CCTGTCCACT GGTCAACGCA AGCGCCTGGC CCTGATCAGC GCCTGGCTGG AGCAGCGCCC GGTACTGGTG TTCGACGAGT GGGCAGCTGA TCAGGACCCC ACCTTCCGCC GCATCTTCTA CACAGAGCTG CTGCCGGACC TCAAGCGCCT GGGCAAGACC ATCATTGTCA TCTCCCACGA TGACCGCTAC TTCGATATTG CCGACCAGCT GGTACACATG GACAGCGGCA AGGTTCGCAC CGCAGCCCAG CCGGCCTGA
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Protein sequence | MTTSFDPPGE DFPMIRKPLS ATRELAQLLK PFWPIVLVSI LLGILGGFSV TTLLATINRA LNSEAGLTHA VLWLFAGLCV LTLLSSIFSD MGTNFVGQKI IAKLRKELGE KVLSAPIEQI ERYRSHRLIP VLTHDIDTIS DFSFAFAPLT ISLTVTLGCM GYLATLSGPL FLLMLLALGA GITAQVIART RGIKGFNTAR EAEDDLQKHY NAIAQGAKEL RIHRPRRYRM FTRHIQGISE RISAIQIKAV NTYILAKTFG STLFFIVIGL ALALQSTWTS VDQAAMTGFV LVLLYMKGPL DHLVSVLPLV SKAQVAFQRI AELSEQFSSP EPNLLLDGQG APRQTIDSLE LHNVQYAFPA VEGSTPFRLG PVNLTINQGD IVFIVGENGC GKTTLIKLLL GLYAPHSGDI LLDGQPVSVL DRDDYRQLFT TIFADYYLFD DVVQGDQQIP DDATQYLQRL EIAHKVSVRD GAFTTTDLST GQRKRLALIS AWLEQRPVLV FDEWAADQDP TFRRIFYTEL LPDLKRLGKT IIVISHDDRY FDIADQLVHM DSGKVRTAAQ PA
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