Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1623 |
Symbol | |
ID | 5194600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1812130 |
End bp | 1812660 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640586093 |
Product | extracytoplasmic-function sigma-70 factor |
Protein accession | YP_001266963 |
Protein GI | 148546861 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.710991 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.111836 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGAAC AACTATCCAC AAGTAAGTGC GATTCACCAT TACTGCAGGC CTTCGTCGAC AACCGCAGCA TCCTGGTCAA GATTGCTGCC CGCATCACTG GCTGCCGCTC CCGCGCCGAG GATGTGGTGC AAGACGCCTT CTTCCGGCTC GGCGCTGCCC CGCAGATCAC TTCGTCGTTC AAGGCGCAAC TAAGCTACCT GTTCCAGATC GTGCGCAACC TTGCGATCGA CCACTACCGC AAGCAGACGA TGGAGCTGAA GTACTCCGGC AGCGAGGAGG AAGGCCTGAA TGTGGTTATC CAGAACGCCT CGCCCGAAGC CACCCATATC AACCTTGCCG CGCTGGACGA CATTGCCGAA GCGCTGAACG AGCTGCCGCA ACGTACCCGC TATGCGTTCG AGATGTACCG CCTGCATGGG GTACCGCAAA AGGACATTGC CAAGGAACTG GGGGTGTCGC CGACTTTGGT CAACTTCATG ATCCGCGATG CACTGGTGCA TTGCCGCAAG ACCGCCAACC GGCAGGTCTG A
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Protein sequence | MAEQLSTSKC DSPLLQAFVD NRSILVKIAA RITGCRSRAE DVVQDAFFRL GAAPQITSSF KAQLSYLFQI VRNLAIDHYR KQTMELKYSG SEEEGLNVVI QNASPEATHI NLAALDDIAE ALNELPQRTR YAFEMYRLHG VPQKDIAKEL GVSPTLVNFM IRDALVHCRK TANRQV
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