Gene Pput_1623 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1623 
Symbol 
ID5194600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1812130 
End bp1812660 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content59% 
IMG OID640586093 
Productextracytoplasmic-function sigma-70 factor 
Protein accessionYP_001266963 
Protein GI148546861 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.710991 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.111836 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGAAC AACTATCCAC AAGTAAGTGC GATTCACCAT TACTGCAGGC CTTCGTCGAC 
AACCGCAGCA TCCTGGTCAA GATTGCTGCC CGCATCACTG GCTGCCGCTC CCGCGCCGAG
GATGTGGTGC AAGACGCCTT CTTCCGGCTC GGCGCTGCCC CGCAGATCAC TTCGTCGTTC
AAGGCGCAAC TAAGCTACCT GTTCCAGATC GTGCGCAACC TTGCGATCGA CCACTACCGC
AAGCAGACGA TGGAGCTGAA GTACTCCGGC AGCGAGGAGG AAGGCCTGAA TGTGGTTATC
CAGAACGCCT CGCCCGAAGC CACCCATATC AACCTTGCCG CGCTGGACGA CATTGCCGAA
GCGCTGAACG AGCTGCCGCA ACGTACCCGC TATGCGTTCG AGATGTACCG CCTGCATGGG
GTACCGCAAA AGGACATTGC CAAGGAACTG GGGGTGTCGC CGACTTTGGT CAACTTCATG
ATCCGCGATG CACTGGTGCA TTGCCGCAAG ACCGCCAACC GGCAGGTCTG A
 
Protein sequence
MAEQLSTSKC DSPLLQAFVD NRSILVKIAA RITGCRSRAE DVVQDAFFRL GAAPQITSSF 
KAQLSYLFQI VRNLAIDHYR KQTMELKYSG SEEEGLNVVI QNASPEATHI NLAALDDIAE
ALNELPQRTR YAFEMYRLHG VPQKDIAKEL GVSPTLVNFM IRDALVHCRK TANRQV