| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1548 |
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| Symbol | |
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| ID | 5191393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1732500 |
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| End bp | 1733696 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640586018 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001266889 |
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| Protein GI | 148546787 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.608789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.693828 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGAAT TCTGGCTTAG CGCGGGCCTT CTGCTGCTCG CTGCCCTCAG CTTTTTGCTG
CTCCCGATCC TGCGTGGCCG CCGTCGCCAG CAGGAAGAAG ACCGCACGGC CTTGAACGTG
GCCCTTTACC AGGAACGTGT CGCCGAGCTG GCGGCCCAAC AAGCCGCCGG TGTGCTCGAT
GAGGCGCAGA TGGCCAAGGG CCGGGACGAG GCTGCCCGCG AGCTGCTGGC CGATACCGAA
GGCGCCGAGG CCCCGCGCCA GGGGCATTTG GGCAAGGCCC TGCCGCTGCT GGCTGCGGTA
CTGGTACCGC TGATGGCGCT GGGGCTGTAC CTGCATTTTG GGGCGGCCGA CAAGGTGGCG
CTGACCCAGG AGTTTGCCGA GGCTCCCAAG TCGATGGAAG AAATGACCAC GCGCCTTGAA
CGCGTGGTGC AGGCCCAGCC GGATTCGGCC GAGGCCATGT ATTTCCTTGG CCGGGCCTAC
ATGGCCGAGC AGCGCCCCGC CGATGCCGCG CGTACGTTTG AACGGGCCGT GGCCCTGGCT
GGCCGCCAGC CCGAGCTGCT GGGGCAGTGG GCCCAGGCCC AGTACTTTGC CGCCAACAAG
CAGTGGAGCC CGCAATTGCA GGCGCTGACT GACGAAGCGC TGAAGGCGGA CCCCAACGAG
GTGACCAGCC TGGGCCTGCG CGGTATTGCC GCGTTTGAAG GCGAGCGCTA TCAGGAAGCC
ATCGACTACT GGAAGCGCTT GCTGGCGCAG TTGCCAGAAG GTGATGCATC GCGAGCGGCG
TTGCAGGGGG GGATCGACCG TGCCGCCGAG CGCCTGGGTG GCGCGCCAGT GCAGGCTACC
GAGCCTGCAC CTGTGGCGAC TCGCCTGAAA GTGCGGGTGG AACTGGCGGC TGCCTTGAAG
GACAAGGTTC AGCCGGACGA CACGGTGTTT ATCTTCGCTC GCGCCAGCAA TGGCCCGCCG
ATGCCGCTGG CGGCCAAGCG GGTGACCGTG GCGCAGTTGC CGATCGAGGT GGAGTTGTCT
GATGCTGATG CGATGATGCC GCAGATGAAA CTGTCGCAGT ATGCCGAAGT CCAACTGGTT
GCACGTGTTT CACGCGCGGG TCAGCCTACC CAGGGTGAGT GGATTGGCCA GGGTGCGCCG
TTGTCTAGCG CCACCCAGGC TACCCAACGC CTGACCATCG ACACTCCAGA CCAGTAA
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| Protein sequence | MIEFWLSAGL LLLAALSFLL LPILRGRRRQ QEEDRTALNV ALYQERVAEL AAQQAAGVLD
EAQMAKGRDE AARELLADTE GAEAPRQGHL GKALPLLAAV LVPLMALGLY LHFGAADKVA
LTQEFAEAPK SMEEMTTRLE RVVQAQPDSA EAMYFLGRAY MAEQRPADAA RTFERAVALA
GRQPELLGQW AQAQYFAANK QWSPQLQALT DEALKADPNE VTSLGLRGIA AFEGERYQEA
IDYWKRLLAQ LPEGDASRAA LQGGIDRAAE RLGGAPVQAT EPAPVATRLK VRVELAAALK
DKVQPDDTVF IFARASNGPP MPLAAKRVTV AQLPIEVELS DADAMMPQMK LSQYAEVQLV
ARVSRAGQPT QGEWIGQGAP LSSATQATQR LTIDTPDQ
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