| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1504 |
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| Symbol | |
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| ID | 5192623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1689772 |
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| End bp | 1691463 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640585974 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_001266845 |
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| Protein GI | 148546743 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.709749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.106415 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCG AACAGGCGTT GACCGTGCTG GTCGCCGAAG ACAGTGCTGT CGATCGCCTT
CTGCTTGCGC AGATCGTGCG CCGCCAGGGG CATCAGGTAT TCACTGCGGA GAACGGCGAG
CAGGCGGTAG CGCTGTACCT CGAGCGGCGC CCGCAACTGG TGCTGCTGGA CGCCTTGATG
CCGGTCATGG ATGGCTTCGA GGCGGCGCGG CAGATCAAGG CATTGGCTGG CGAGGCGCTG
GTGCCGATCA TTTTCCTGAC GTCGCTGAAT GAAGAAGAAG GCCTGGTGCG TTGCCTGGAG
GCGGGGGGCG ATGATTTCAT GGCCAAGCCC TACAGTGCGG TGATCCTCGC TGCCAAGATT
CGCGCCATGG ACCGTCTGCG TCGCTTGCAG GCAACGGTAC TGGAACAGCG TGACCAGATC
ACCCGGCATC ACCATCACCT GCTTAACGAG CAGCGGGTCG CCAAGGCGGT GTTCGACAAG
GTGGCCCACT CGGGTTGCCT TTCTGCACCC AACATTCGCT ACCTGCAATC GCCTTACGCG
CTGTTCAATG GCGACCTGAT GCTGGCGGCA TTTACCCCGG CCGGCGACAT GCGTGTGCTG
CTTGGCGATT TCACCGGTCA CGGCCTGCCG GCGGCGGTCG GCGCCATGCC GATGGCTGAG
GTGTTCTACG GCATGACCGC CAAGGGCTAC GGCATGGCGC AGATCCTGCG CGAGATGAAT
GCCAAGCTCA AGCGCATCCT GCCGGTGGAC ATGTTCTGCT GTGCGCTGCT GCTCAACCTC
AGCATGCAGC GCGGCTCGGT GGAGGTATGG AATGGCGGTA TGCCTGATGG CTATCGCCTG
TCGGTGGATG GCCAAGTGCT GTCGGCACTG AGTTCGCGGC ACCTGCCGCT GGGCATTCTG
GCCGCTGAGC GCTTCGATGA CAGCACAGAG GTGTTGCCGC TGGCACCGGG CGAGCGCCTG
TTGCTGCTGT CAGACGGTGT GCTCGATACC GCCGACGACC AGGAGCGCCT GTTTGGCGTA
CAGCGCCTGC GAGCGGTGCT GGCCGACAAC CGCGACCCTG TGCAGTTGTT CGATGAGCTG
ATGCTGGCCC TGGAGCGTTT TGGTGGGCAG CCACGCGATG ACATCAGCTT GTGCGACATT
CGCATGTTCA CTGCCGAGGA GCGGGTGCCG GCACCGATGA TCTACTCTGA TAGTGGCCGC
TCCAGCCCGC TGGACTGGTC GCTGAGCTTC GAAGTGCGGG GCGAAAGCCT TAAGCGCTTC
AACCCTGTGC CTTACCTGGT GCAGTTGTTG CAGGAAATTC ATGGCCTGCG CGCACGTACC
GGCAACTTGC ACAGTGTGCT TAGTGAGTTG TATGCCAATG CGCTGGAGCA TGGTGTGCTG
GGCCTGGACT CACAGCTCAA GCGCGATGTG CAAGGCTTTA CCGACTATTA CCAGGAGCGC
GCCCGGCGCC TGGGCTCGCT GACCGAAGGC TTTGTAAGCA TCGATTTCAA GGTTGAACCG
CATGGCGGCG GTGGGCGTCT GACGATCGAG GTGCGCGACA GCGGTGCCGG CTTCGACGTG
CAGCGCGTGC TTGCGCGGCC TTCGCTGGAT CAGGGGCTGA GCGGTCGCGG TCTGAATCTG
GTGCGGCAGT TGGCCAGTGA CGCGCGCTGG AGTGAGGGCG GGCGTTGCGC GCATGTGGAG
TTCGTATGGT GA
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| Protein sequence | MPAEQALTVL VAEDSAVDRL LLAQIVRRQG HQVFTAENGE QAVALYLERR PQLVLLDALM
PVMDGFEAAR QIKALAGEAL VPIIFLTSLN EEEGLVRCLE AGGDDFMAKP YSAVILAAKI
RAMDRLRRLQ ATVLEQRDQI TRHHHHLLNE QRVAKAVFDK VAHSGCLSAP NIRYLQSPYA
LFNGDLMLAA FTPAGDMRVL LGDFTGHGLP AAVGAMPMAE VFYGMTAKGY GMAQILREMN
AKLKRILPVD MFCCALLLNL SMQRGSVEVW NGGMPDGYRL SVDGQVLSAL SSRHLPLGIL
AAERFDDSTE VLPLAPGERL LLLSDGVLDT ADDQERLFGV QRLRAVLADN RDPVQLFDEL
MLALERFGGQ PRDDISLCDI RMFTAEERVP APMIYSDSGR SSPLDWSLSF EVRGESLKRF
NPVPYLVQLL QEIHGLRART GNLHSVLSEL YANALEHGVL GLDSQLKRDV QGFTDYYQER
ARRLGSLTEG FVSIDFKVEP HGGGGRLTIE VRDSGAGFDV QRVLARPSLD QGLSGRGLNL
VRQLASDARW SEGGRCAHVE FVW
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