| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1179 |
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| Symbol | |
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| ID | 5194214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1329055 |
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| End bp | 1331901 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640585637 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_001266524 |
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| Protein GI | 148546422 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.572965 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGC AGTATCAACC GGGGCAACGC TGGATCAGCG ACAGCGAAGC AGAGCTCGGC
CTGGGTACCA TCCTGGCGCA GGATGGCCGC CTGTTGACCG TGCTCTACCC GGCCACTGGC
GACACCCGCC AGTATTCCCT GCGCAATGCG CCGCTGACCC GCGTGCGCTT CTCGCCAGGT
GACCAGATCA CCCACTTCGA AGGCTGGAAG CTGACCGTAC GCGAAGTCGA GGACATCGAC
GGGCTGATGG TCTACCACGG CCTGGACGGG CAGAATCAGC CTCGCACCCT GCCTGAAACC
CAGTTGTCGA ACTTCATTCA GTTCCGCCTG GCCAGCGACC GCCTGTTCGC CGGGCAGATA
GACCCACTGT CGTGGTTCAG CCTGCGCTAC AACACCCTGC AGCACACCAG CAAGCAGATG
CAATCGGCAC TGTGGGGGTT GGGCGGCTGC CGCGCACAGC CCATCGCCCA CCAACTGCAC
ATTGCCCGCG AAGTCGCCGA CCGCAGCGCC CCGCGCGTTC TGCTGGCCGA CGAAGTGGGC
CTGGGCAAAA CCATCGAAGC CGGCCTGGTC ATTCACCGCC AGCTGCTGTC GGGGCGCGCC
AGTCGCGTAC TGATCCTGGT GCCGGAAAAC CTCCAGCACC AGTGGCTGGT GGAAATGCGC
CGGCGCTTCA ATCTGCAAGT GGCGCTGTTC GACGCCGAGC GCTTCATCGA AAGCGACGCC
AGCAACCCGT TCGAGGATGC CCAACTGGCG TTGGTTGCCC TGGAGTGGCT GGTCGACGAC
GAAAAGGCCC AGGACGCACT GTTTGCCGCT GGCTGGGACC TGATGGTCGT CGACGAAGCC
CACCACCTGG TCTGGCACGA AGACCAGGTC AGCGCCGAAT ACGGCCTGGT CGAGCAACTG
GCCCAAGTGA TTCCGGGCGT ACTGCTGCTC ACCGCCACCC CCGAGCAGCT TGGCCAGGAC
AGCCACTTCG CCCGCCTGCG CCTGCTCGAC CCCAACCGTT TTCACGACCT GGCCGCTTTC
CGCGCCGAAA GCGAGCACTA CCGCCCGGTA GCCGAAGCGG TGCAGGAACT GCTCGACGAG
GGCCGCCTGT CGCCCAAGGC CCACGCCACC ATCCTGGGCT TCCTGGGTGC CGAAGGCGAA
GCCCTGCTGG CTGCGGTCAG CGACGGCGAC ACCCAGGCCA GCGCCAGGCT GATTCGCGAA
CTGCTGGATC GCCACGGCAC CGGACGCGTG CTGTTCCGTA ACACCCGTGC GGCGATTCAG
GGCTTCCCCG AGCGCCAGTT GCACCCCTAC CCGCTGGCCA CGCCCGAGCA ATACCGCAAC
CTGCCAGCCG GCGAGCATGC CGAGCTGTAC CCGGAAGTTG CCTTCCAGGC CCAAGGTGAA
GTGGCCGATG ACGAGCGCTG GTGGCGTTTC GACCCACGCG TCGACTGGCT GATCGACACC
CTGAAGATGC TCAAGCGCAC CAAAGTGCTG GTGATCTGCG CCCACGCCGA AACCGCCATG
GACCTGGAGG ACGCCCTGCG CGTGCGCTCC GGCATCCCGG CCTCGGTGTT CCATGAAGGC
ATGAGCATCC TCGAGCGCGA CCGCGCCGCT GCCTACTTTG CCGATGAAGA GTTTGGCGCC
CAGGTCCTGA TCTGCTCGGA AATCGGCAGC GAAGGCCGCA ACTTCCAGTT CGCTCATCAC
CTGGTGATGT TCGACCTGCC AGCGCACCCC GACCTGCTCG AACAGCGCAT CGGCCGCCTT
GACCGGATTG GTCAGAAGCA CACTATCCAG TTGCACATCC CGTACCTGCA AGACAGCCCG
CAAGAGCGCC TGTTCCAGTG GTACCACGAA GGGCTCAACG CCTTCCTCAA CACCTGCCCC
ACCGGCAATG CCCTGCAGCA CCAGTTCGGC CCACGCCTGC TGCCGCTGTT AGAAGGCGGC
GATCACAAGG CCTGGGATAC CCTGGTGGCC GACGCCCGCA GCGAGCGCGA GCGCCTGGAA
GCCGAACTGC ACACTGGCCG TGACCGCCTG CTGGAGCTCA ATTCCGGCGG CGCCGGCGAA
GGTCAGGCGC TGGTCGAGGC CATTCTCGAA CAAGACGACC AGTTCGCCCT GCCGATCTAC
ATGGAAACCC TGTTCGACGC CTTCGGCATC GACAGCGAAG ACCATTCCGA GAACGCACTG
ATCCTCAAGC CGAGCGAGAA GATGCTCGAT GCCAGCTTCC CGCTGGGCGA CGATGAAGGC
GTGACCATCA CCTATGACCG TGGCCAGGCG CTGTCACGCG AGGACATGCA GTTCCTCACC
TGGGAGCACC CGATGGTGCA GGGTGGCATG GATCTGGTGC TGTCGGGCTC GATGGGCAAC
ACCGCCGTGG CGTTGATCAA GAACAAAGCG CTCAAACCAG GCACCGTACT GCTTGAACTG
CTGTTCGTCA GCGAGGTGGT GGCACCCCGC AGCCTGCAAC TGGGCCGCTA CCTGCCGCCG
GCGGCACTGC GCTGCCTGCT CGACGCCAAT GGCAACGACC TGGCGTCACG CGTTGCCTTC
GAAACCCTCA ACGACCAGCT CGAGAGCGTA CCGCGCGCCA GCGCCAACAA GTTCGTCCAG
GCCCAGCGCG ATGTGCTGGC CAAGCGTATC AGTGGCGGCG AGGAGAAGAT CCTGCCGGCC
CACAACGAGC GCGTGGCCGA AGCCCAGCGC CGCCTCACAG CCGAGGCCGA CGAAGAGCTG
GCGCGCCTGG TGGCATTGCA AGCGGTCAAC CCAAGTGTGC GTGACAGCGA AATCGACGCC
CTGCGCAAGC GGCGCGAAGA TGGCCTGGCA ATGCTGGAGA AGGCCGCCCT GCGCCTGGAG
GCCATTCGCG TGCTGGTGGC TGGCTAA
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| Protein sequence | MAQQYQPGQR WISDSEAELG LGTILAQDGR LLTVLYPATG DTRQYSLRNA PLTRVRFSPG
DQITHFEGWK LTVREVEDID GLMVYHGLDG QNQPRTLPET QLSNFIQFRL ASDRLFAGQI
DPLSWFSLRY NTLQHTSKQM QSALWGLGGC RAQPIAHQLH IAREVADRSA PRVLLADEVG
LGKTIEAGLV IHRQLLSGRA SRVLILVPEN LQHQWLVEMR RRFNLQVALF DAERFIESDA
SNPFEDAQLA LVALEWLVDD EKAQDALFAA GWDLMVVDEA HHLVWHEDQV SAEYGLVEQL
AQVIPGVLLL TATPEQLGQD SHFARLRLLD PNRFHDLAAF RAESEHYRPV AEAVQELLDE
GRLSPKAHAT ILGFLGAEGE ALLAAVSDGD TQASARLIRE LLDRHGTGRV LFRNTRAAIQ
GFPERQLHPY PLATPEQYRN LPAGEHAELY PEVAFQAQGE VADDERWWRF DPRVDWLIDT
LKMLKRTKVL VICAHAETAM DLEDALRVRS GIPASVFHEG MSILERDRAA AYFADEEFGA
QVLICSEIGS EGRNFQFAHH LVMFDLPAHP DLLEQRIGRL DRIGQKHTIQ LHIPYLQDSP
QERLFQWYHE GLNAFLNTCP TGNALQHQFG PRLLPLLEGG DHKAWDTLVA DARSERERLE
AELHTGRDRL LELNSGGAGE GQALVEAILE QDDQFALPIY METLFDAFGI DSEDHSENAL
ILKPSEKMLD ASFPLGDDEG VTITYDRGQA LSREDMQFLT WEHPMVQGGM DLVLSGSMGN
TAVALIKNKA LKPGTVLLEL LFVSEVVAPR SLQLGRYLPP AALRCLLDAN GNDLASRVAF
ETLNDQLESV PRASANKFVQ AQRDVLAKRI SGGEEKILPA HNERVAEAQR RLTAEADEEL
ARLVALQAVN PSVRDSEIDA LRKRREDGLA MLEKAALRLE AIRVLVAG
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