| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1116 |
|---|
| Symbol | glpK |
|---|
| ID | 5194157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1263121 |
|---|
| End bp | 1264620 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640585574 |
|---|
| Product | glycerol kinase |
|---|
| Protein accession | YP_001266461 |
|---|
| Protein GI | 148546359 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0554] Glycerol kinase |
|---|
| TIGRFAM ID | [TIGR01311] glycerol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.151406 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACA CCCAGGATAA GAACTACATC ATCGCCCTGG ACCAGGGTAC CACCAGCTCA
CGGGCGATCA TTTTCGACCG TGACGCCAAT GTTGTAGGTA CCTCCCAACG CGAGTTCGCA
CAGCATTACC CGCAGGCGGG CTGGGTCGAG CATGACCCGA TGGAGATTTT CGCCACACAA
AGCGCCACCA TGGTCGAGGC CCTTGCCCAG GCGGGTATCA GCCACGCCCA GGTCGCTGCG
CTGGGCATCA CCAACCAACG CGAAACCACG GTGGTGTGGG ACAAGGAAAC CGGACGCCCG
GTGTACAACG CCATTGTCTG GCAGTGCCGC CGCAGCACCG AGATTTGTGC CCAGCTCAAG
CGCGACGGCC ACGAAGGCTA CATTCGTGAA ACCACCGGGC TGGTCACCGA CCCGTATTTC
TCCGGCACCA AGCTGAAGTG GATCCTCGAC AATGTCGACG GCGCCCGTGA ACGCGCCGAG
CGTGGCGAAC TGCTGTTCGG TACCATCGAC ACCTGGCTGA TCTGGAAGTT TACGGGTGGC
AAGGTTCACG TCACCGACTA CACCAACGCC TCGCGCACAC TGATGTTCAA CATCCACAGC
CTGCAGTGGG ACGACAAGCT GCTGCAGATC CTGGGTATCC CGCGGCAAAT GCTGCCTGAG
GTGCGCCCAT CTTCGGAAGT GTACGGCCAC ACCAAGAGCG GCATTGCCAT TGCTGGTATC
GCCGGCGACC AGCAGTCGGC ACTGTTCGGC CAGATGTGCG TTGAGCCGGG CCAAGCCAAG
AATACCTACG GCACCGGCTG CTTCCTGTTG ATGAACACGG GCGACCAGGC GGTGAAGTCG
TCCCACGGCC TGCTCACTAC CATTGCCTGC GGCCCGCGTG GTGAGGTGGC CTATGCACTG
GAAGGCGCGG TATTCAATGG TGGCTCTACC GTGCAATGGC TGCGTGACGA ACTGAAGATC
GTCAACGACG CCCTGGATAC CGAGTATTTC GCCAGCAAGG TCAAGGACAG CAACGGCGTG
TACCTGGTGC CCGCCTTTAC CGGCCTGGGT GCCCCGTACT GGGACCCGTA TGCCCGTGGT
GCGTTGTTCG GCCTGACACG TGGCGTGAAG GTGGACCACA TTATTCGCGC CGCACTGGAG
TCCATCGCCT ACCAGACCCG CGATGTCCTC GACGCCATGC AGCAAGACTG TGGCCAGCGC
TTGTCCGAGC TGCGCGTGGA CGGTGGTGCA GTGGCCAACA ACTTCCTCAT GCAGTTCCAG
GCCGACATCC TCGGCACCTG CGTCGAGCGG CCGCAGATGC GCGAAACCAC GGCGCTGGGC
GCCGCCTATC TGGCAGGCCT GGCCTGTGGC TTCTGGAGTG GCCTGGACGA GCTGCGCGAC
AAGGCGATCA TCGAGCGTGA GTTCAGCCCG CAGTTGGACG AAACGCAGAA AGAAAAGCTG
TATGCCGGCT GGAAGAAGGC GGTCGAGCGT ACCCGTGACT GGGAAGATCA CGAGGCATGA
|
|---|
| Protein sequence | MTDTQDKNYI IALDQGTTSS RAIIFDRDAN VVGTSQREFA QHYPQAGWVE HDPMEIFATQ
SATMVEALAQ AGISHAQVAA LGITNQRETT VVWDKETGRP VYNAIVWQCR RSTEICAQLK
RDGHEGYIRE TTGLVTDPYF SGTKLKWILD NVDGARERAE RGELLFGTID TWLIWKFTGG
KVHVTDYTNA SRTLMFNIHS LQWDDKLLQI LGIPRQMLPE VRPSSEVYGH TKSGIAIAGI
AGDQQSALFG QMCVEPGQAK NTYGTGCFLL MNTGDQAVKS SHGLLTTIAC GPRGEVAYAL
EGAVFNGGST VQWLRDELKI VNDALDTEYF ASKVKDSNGV YLVPAFTGLG APYWDPYARG
ALFGLTRGVK VDHIIRAALE SIAYQTRDVL DAMQQDCGQR LSELRVDGGA VANNFLMQFQ
ADILGTCVER PQMRETTALG AAYLAGLACG FWSGLDELRD KAIIEREFSP QLDETQKEKL
YAGWKKAVER TRDWEDHEA
|
|---|
| |