Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1104 |
Symbol | |
ID | 5193453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1246658 |
End bp | 1247575 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640585562 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001266449 |
Protein GI | 148546347 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.471047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.331452 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGGAGA TCCGTCACCT GAAAACCCTT CATGCCCTGC GCGAGGCCGA CAGCCTGGTG GAGGCCGCCG AACGCCTGCA CCTGACCCAG TCGGCGTTGT CGCACCAGTT CAAGGAGCTG GAAGAGCGCC TGGGCCTCCC GATTTTCGTG CGCAAGACCA AGCCAATCCG CTTCACCAGC GCCGGGCTGC GTCTGCTGCA ACTGGCTGAT GCCACCCTGC CGTTGCTGCG CAGCGCCGAA CGTGACATCG CACGCCTGGC CGGAGGCACT GCCGGACGCC TGCACATGGC TATCGAATGC CACAGCTGCT TCCAGTGGCT GATGCCGACC ATCGACCAGT TCCGTGATGC CTGGCCGGAA GTGGAACTGG ACCTGGCATC GGGCTTTGCT TTCGCCCCGC TACCGGCCCT GGCCCGCGGC GACCTTGACC TGGTGGTGAC CTCCGACCCG GTGGACCTGG CAGGCATCAC TTATGTGCCG CTGTTCACCT ACGAGGCGAT GCTGGCAGTG GCCAACCAGC ACCCGTTGGC CAGCAAGCCT TACATCGTGC CGCAAGACTT GCTCGACCAG ACGCTGATCA CCTACCCGGT GGAGCGCGAT CGCCTGGACA TCTTCACGCG CTTCCTGGAG CCGGCCGATA TCGAGCCAGC CGCCGTGCGT ACCTCGGAAC TGACGGTGAT GATGATGCAG CTGGTGGCCA GCGGCCGTGG CGTATGCGGC ATGCCGCATT GGGCGCTGCA CGAGTACAGC TCGCGCGGCT ATGTGAAGGG CAAACGCCTG GGCGAGAAAG GCCTGTTTGC CACGCTTTAT GCCGCCGTAC GCACCGACAT GCTCGATGCC CCGTACATGC GCGACTTTTT GCTGACGGCC AAGGACACCT CGTTCGCCAC CCTCGACGGC GTCAGCGCGG TGCGTTGA
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Protein sequence | MLEIRHLKTL HALREADSLV EAAERLHLTQ SALSHQFKEL EERLGLPIFV RKTKPIRFTS AGLRLLQLAD ATLPLLRSAE RDIARLAGGT AGRLHMAIEC HSCFQWLMPT IDQFRDAWPE VELDLASGFA FAPLPALARG DLDLVVTSDP VDLAGITYVP LFTYEAMLAV ANQHPLASKP YIVPQDLLDQ TLITYPVERD RLDIFTRFLE PADIEPAAVR TSELTVMMMQ LVASGRGVCG MPHWALHEYS SRGYVKGKRL GEKGLFATLY AAVRTDMLDA PYMRDFLLTA KDTSFATLDG VSAVR
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