| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1088 |
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| Symbol | |
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| ID | 5190558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1226659 |
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| End bp | 1228107 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640585546 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001266433 |
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| Protein GI | 148546331 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.411891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCCT ATCGCCAGGC ACGGCAGAGC GGAGTGGCCA TGGCCCCGGC AGAGCAGGGC
TGGCAGCTAT GGCTGCGGCC CGACGCCGAC AATGCCCAGT TGCAGGAGTT GCTGCGTGTG
CATGGCCAGC CAAGCCTGCT CGAATACCTG GAACCTGCGC TGTTCGACGA GCGCCTTGGC
CAGCTGTACC AGGCCGGCGA TGCCGCCACC GAAGCGCTGA TCGAAGGCAT TGGCGACCAG
GTCGACCTGG ATAGCCTGAT GAGCGAGATG CCGCGCATCG AAGACCTGCT TGAAAGCGAC
GACGAAGCCC CGGTGATTCG CCTGATCAAC GGCCTGTTCG GCCAGGCGCT GCGGCTGCGC
GCCTCGGACA TCCATATCGA GACCTTCGAG CAGAGCCTGG TGGTGCGTTT GCGGGTCGAT
GGCCACCTGC GTGAGGTGCT GCGCCCTCCA CGTGCGTTGT CGGCCATGCT GGTATCACGG
ATCAAGGTCA TGGCCCGCCT GGACATTGCT GAAAAGCGTC AGCCCCAGGA CGGCCGCATC
ACCTTGCGCG CGGCGGGGCG CGAAGTGGAC GTACGGGTCT CGACCTTGCC CGGCATCCAC
GGCGAGCGGG TGGTGATGCG CGTGCTCGAC AAGCAGGCCA GCCTGCTGGC GCTGGATAAC
CTGGGCATGC CGACAGCGGT ATTGCAGGGC CTGCGCAGTT GCCTGGCGCG GCCCAACGGC
ATCGTGTTGT CCACCGGCCC GACCGGTTCG GGCAAGACCA CGACCCTGTA CGCCAGCCTG
AACAGCCTCA ACGACGGCAG CCGCAACATC CTCACCGTCG AGGACCCGGT GGAGTACGCC
ATCGCCGGCA TTGGCCAAAC CGCCATCAAC CCGCGTGCCG GGCTGACATT TGCCAGTGGC
CTGCGCGCCA TCCTGCGTCA GGACCCTGAC GTGATCATGC TCGGCGAAAT CCGCGATCAG
GAGACTGCGC AGATCGCCGT GCAGGCCAGC CTCACCGGCC ACCTGGTGCT GTCGACCTTG
CACACCAACA GCGCGGTAGG CGCAGTGACC CGCCTGCGCG ACATGGGCAT CGAGCCGTTC
CTGATCGCCT CGTGCCTGCG CGGCGTCCTG GCCCAGCGCC TGGTGCGGCG TTTGTGCAGC
TGTGCCGTGG CGCACCCGCT ACAGGCTGCC GAGCGCGAGC TGTGGCCTGA GCTTGCGGCG
TTGGGCAGCA CTTATCACGC CGTGGGTTGC GAGCAGTGCC AGGGCAGCGG TTATATCGGC
CGACTGGGGC TGTACGAATT CATCGAGCTG GACGCCGGGC TCATCGGCCT GTTGTACGAC
GGCGCCAGCG AGCTGGCCAT GCAGGATTAC CTGGCTGATC GGCGTCAGAG CCTGGTGGCG
ATGGCCAGCG ATTGCCTGGC CCGCGGTGAG ACCAGCCTGG CTGAAGTGCT GCGCGTGGTG
CAGGGCTAA
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| Protein sequence | MLPYRQARQS GVAMAPAEQG WQLWLRPDAD NAQLQELLRV HGQPSLLEYL EPALFDERLG
QLYQAGDAAT EALIEGIGDQ VDLDSLMSEM PRIEDLLESD DEAPVIRLIN GLFGQALRLR
ASDIHIETFE QSLVVRLRVD GHLREVLRPP RALSAMLVSR IKVMARLDIA EKRQPQDGRI
TLRAAGREVD VRVSTLPGIH GERVVMRVLD KQASLLALDN LGMPTAVLQG LRSCLARPNG
IVLSTGPTGS GKTTTLYASL NSLNDGSRNI LTVEDPVEYA IAGIGQTAIN PRAGLTFASG
LRAILRQDPD VIMLGEIRDQ ETAQIAVQAS LTGHLVLSTL HTNSAVGAVT RLRDMGIEPF
LIASCLRGVL AQRLVRRLCS CAVAHPLQAA ERELWPELAA LGSTYHAVGC EQCQGSGYIG
RLGLYEFIEL DAGLIGLLYD GASELAMQDY LADRRQSLVA MASDCLARGE TSLAEVLRVV
QG
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