| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0953 |
|---|
| Symbol | |
|---|
| ID | 5191729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1080577 |
|---|
| End bp | 1082661 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640585411 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001266298 |
|---|
| Protein GI | 148546196 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.479212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCAT GCGCATGGAT TAAGGAAACC CCATTGAAGC TGGAATTGCG GAACAGCTTG
TCGGTCAAGT TGCTCAGGGT CGTGCTGCTG TCGGCGTTGG CGGTTGGCGT CGTGCTCAGC
TGTGCGCAAA TCGTCTATGA CACCTACAAG ACCCGCCAGG CCGTGGACAA CGATGCCCAG
CGCATCCTCG ACATGTTCCG CGATCCCTCG ACCCAGGCGG TTTACAGCCT CGACCGTGAA
ATGGGCATGC AGGTCATGGA AGGCCTGTTC CAGGACGAAT CAGTGCGCAT GGCCTCCATT
GGCCACCCCA ACGAAACCAT GCTGGCAGAA AAGTCCCGCC CGCTGCAGGA CATGTCCATG
CGCTGGCTCA CCGACCTCAT CCTCGGCCAG GAGCGCACCT ACACCACGCA ACTGGTCGGC
CGTGGCCCTT ACAGCGAATA CTACGGCGAT CTCAGCATTA CCCTCGATAC CTCCTCCTAC
GGCAAAGATT TCCTGATCAA CGCGGTGATC ATCTTCATAT CCGGCGTGCT GCGGGCCATG
GCCATGGGCC TGGTGCTTTA CCTGGTCTAC CACTGGCTGC TGACCAAACC GCTGTCGAAG
ATCATCGAGC ACCTCACCCA GATCAACCCT GACCGCCCCA GCCAGCACCA GATACCGCTG
CTCAAGGGCC ACGAGAAAAA CGAACTGGGC CTGTGGGTGA ACACCGCCAA CCAGTTGCTG
GCCTCGATCG AGCGCAACAC CCATCTGCGC CACGAGGCGG AAAACAGCCT GCAGCGCATG
GCCCAGTACG ACTTCCTCAC CGGCCTGCCC AACCGCCAGC AACTGCAGCA GCAACTGGAC
AAGATCCTCG TCGACGGCGG CCGTCTGCAG CACCGTGTGG CAGTGCTGTG CGTTGGCCTG
GACGACTTCA AGGGTATCAA CGAACAGTTC AGCTACCAGG TCGGTGACCA GTTGCTGCTG
GCCCTGGCCG ATCGACTACG CGCCCACAGC GGCCGCTTGG GCGCTCTGGC GCGGCTGGGC
GGCGACCAGT TCGCCCTGGT ACAGGCCAAT ATCGAGCAGC CCTACGAGGC TGCCGAACTG
GCGCAAAGCA TCCTTGATGA CCTGGAAGTA CCGTTCGACC TCGACCACGA GCAAATCCGC
CTGCGTGCGA CCATCGGCAT CACCCTGTTC CCCGAAGACG GTGATAGCAC CGAAAAACTG
CTGCAGAAAG CCGAACAGAC CATGACCCTG GCCAAGGCCC GCTCGCGCAA CCGCTACCAG
TTCTATATCG CCAGCGTCGA CAGCGAGATG CGTCGCCGTC GCGAACTGGA AAAGGACCTG
CGTGAAGCCC TGCCCCGCAA CCAGCTTTAC CTGGTGTATC AGCCACAGAT CAGCTACCGC
GACCACCGGG TGGTTGGCGT AGAGGCCCTG CTGCGCTGGC AGCACCCGGA ACTGGGCATG
GTGCCACCCG ACCAGTTCAT CCCCCTGGCC GAGCAGAACG GCAGCATCAT CAGCATCGGC
GAATGGGTGC TTGACCAGGC CTGCCGGCAA CTGCGCGAAT GGCACGACCA AGGCTTCAGC
GACCTGCGCA TGGCGGTCAA CCTGTCTACC GTGCAACTGC ACCACAGCGA GCTGCCACGG
GTGGTCAACA ACCTGCTGCA AGCCTATCGC CTACCACCGC GCAGCCTGGA ACTGGAAGTC
ACCGAAACCG GCCTGATGGA AGACATCAGC ACCGCCGCCC AGCACCTGTT GAGCCTGCGC
CGCTCCGGGG CGCTGATTGC CATCGACGAC TTCGGCACCG GCTACTCGTC CCTCAGCTAC
CTGAAGTCGC TGCCCCTGGA CAAGATCAAG ATCGACAAGA GTTTCGTTCA GGACCTGCTC
GACGATGATG ACGACGCCAC CATCGTTCGC GCCATCATCC AGCTGGGCAA GAGCCTGGGG
ATGCAGGTGA TCGCCGAGGG CGTGGAAACG GCCGAGCAGG AAACCTACAT CGTTGCCCAG
GGTTGCCACG AGGGCCAGGG CTACCACTAC AGCAAGCCTC TTTCGGCCCG TGAACTGACC
CACTTCCTCA AACAAGCGCA ACGCAACCGG GTTTCGGTGT CCTGA
|
|---|
| Protein sequence | MMPCAWIKET PLKLELRNSL SVKLLRVVLL SALAVGVVLS CAQIVYDTYK TRQAVDNDAQ
RILDMFRDPS TQAVYSLDRE MGMQVMEGLF QDESVRMASI GHPNETMLAE KSRPLQDMSM
RWLTDLILGQ ERTYTTQLVG RGPYSEYYGD LSITLDTSSY GKDFLINAVI IFISGVLRAM
AMGLVLYLVY HWLLTKPLSK IIEHLTQINP DRPSQHQIPL LKGHEKNELG LWVNTANQLL
ASIERNTHLR HEAENSLQRM AQYDFLTGLP NRQQLQQQLD KILVDGGRLQ HRVAVLCVGL
DDFKGINEQF SYQVGDQLLL ALADRLRAHS GRLGALARLG GDQFALVQAN IEQPYEAAEL
AQSILDDLEV PFDLDHEQIR LRATIGITLF PEDGDSTEKL LQKAEQTMTL AKARSRNRYQ
FYIASVDSEM RRRRELEKDL REALPRNQLY LVYQPQISYR DHRVVGVEAL LRWQHPELGM
VPPDQFIPLA EQNGSIISIG EWVLDQACRQ LREWHDQGFS DLRMAVNLST VQLHHSELPR
VVNNLLQAYR LPPRSLELEV TETGLMEDIS TAAQHLLSLR RSGALIAIDD FGTGYSSLSY
LKSLPLDKIK IDKSFVQDLL DDDDDATIVR AIIQLGKSLG MQVIAEGVET AEQETYIVAQ
GCHEGQGYHY SKPLSARELT HFLKQAQRNR VSVS
|
|---|
| |