| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0924 |
|---|
| Symbol | |
|---|
| ID | 5195341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1050161 |
|---|
| End bp | 1051786 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640585382 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001266269 |
|---|
| Protein GI | 148546167 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAAC ACGCAGTCAT TCCGTTCCTG CTGGGTGCAG GCTTGCTCAG CGGCGCACCT
TCGGCCGTTG CCGCATCCAA CCTGGTGTTC TGCTCCGAAG GCAGCCCAGC CGGCTTCGAT
CCGGGGCAGT ACACCACCGG GACCGACTTC GACGCCTCGG CAGAGACCGT GTTCAACCGC
CTGACCCAGT TCGAGCGCGG CGGCACTGCG GTCATCCCGG GCCTGGCGAC CAAATGGGAA
GTGTCCGACG ACGGCAAGAC CTACACCTTC CACCTGCGTG AAGGGGTCAA GTTCCACACC
ACCGACTACT TCAAGCCCAG TCGCCCGTTC AACGCCGACG ACGTGCTGTT CACCTTCAAT
CGCATGCTCG ACAAGGACAA CCCGTTCCGC AAGGCGTACC CCACCGAGTT TCCATACTTC
ACCGACATGG GCATGGACAA GAACATTGCC AAGGTGGAGA AGCTTGACGA GCACACGGTG
AAGTTCACCC TCAACGAGGT GGACGCCGCG TTCATCCAGA ACCTGGCCAT GAGCTTTGCC
TCGATCCAGT CCGCCGAATA CGCCGACCAG TTGCTCAAGA ATGGCAAGGC CGCCGACATC
AACCAGAAGC CGATCGGCAC CGGCCCGTTC GTGTTCAGCA AGTACCAGAA GGACGCGCAG
ATCCGCTTCA AGGGCAACAA GGACTACTGG AAGCCCGAGG ACGTGAAGAT CGACAACCTG
ATCTTTGCCA TCACCACCGA CGCCTCGGTG CGCATGCAGA AGCTTAAAAA GAACGAGTGC
CAGGTCACCC TGTTCCCACG CCCGGCCGAC ATCGAGCCGC TAAAAGCCGA CAAGAACCTG
CAAATGCCGC AGCAGGCCGG CTTCAACCTC GGCTATATCG CCTACAACGT GATGGACAAG
ATCAAGGGCA GCAACGAGGC CAACCCCATG GCCCAGCTGA AAGTCCGACA GGCGCTGGAC
ATGGCCGTGG ACAAGAAAAA GATCATCGAG TCGGTGTACC AGGGCGCCGG CCAGCTGGCG
GTCAACGCCA TGCCGCCCAC GCAGTGGTCT TATGACGACA GCATCAAGGA CGCCGCCTTC
GACCCCGAGA AAGCCAAGCA ACTGCTCAAG GAAGCCGGCA TCAAGGAAGG CACCGAAATC
ACCCTGTGGG CCATGCCCGT GCAACGCCCG TACAACCCCA ATGCCAAGCT GATGGCCGAA
ATGCTCCAGT CCGACTGGGC CAAGATCGGT ATCAAGGCAA AGATCGTCAG TTATGAATGG
GGCGAGTACA TCAAGCGCTC CAAAGGTGGC GAACAGGGTG CCATGCTGAT TGGCTGGAGC
GGTGACAATG GTGACCCGGA CAACTGGCTG GGTACCCTCT ACGGTTGCGA TGCCGTCGAT
GGCAACAACT TCTCCAAGTG GTGCTACAAG CCCTACGACG ATCTGATCAA GCAGGCCAAG
GCCACGTCCG ACCAGGCCAA ACGTACCGAG CTGTACCAGA AGGCGCAGCA CATCCTCAAG
GAGCAGGTAC CGATCACCCC GATCGCCCAC TCCACCGTCT ACCAGCCCAT GAGCGCCAAG
GTGAAGGACT TCAAGATCAG CCCATTCGCG CTGAATTCCT TCTACGGCGT CAGCGTGGAC
AAATAG
|
|---|
| Protein sequence | MLKHAVIPFL LGAGLLSGAP SAVAASNLVF CSEGSPAGFD PGQYTTGTDF DASAETVFNR
LTQFERGGTA VIPGLATKWE VSDDGKTYTF HLREGVKFHT TDYFKPSRPF NADDVLFTFN
RMLDKDNPFR KAYPTEFPYF TDMGMDKNIA KVEKLDEHTV KFTLNEVDAA FIQNLAMSFA
SIQSAEYADQ LLKNGKAADI NQKPIGTGPF VFSKYQKDAQ IRFKGNKDYW KPEDVKIDNL
IFAITTDASV RMQKLKKNEC QVTLFPRPAD IEPLKADKNL QMPQQAGFNL GYIAYNVMDK
IKGSNEANPM AQLKVRQALD MAVDKKKIIE SVYQGAGQLA VNAMPPTQWS YDDSIKDAAF
DPEKAKQLLK EAGIKEGTEI TLWAMPVQRP YNPNAKLMAE MLQSDWAKIG IKAKIVSYEW
GEYIKRSKGG EQGAMLIGWS GDNGDPDNWL GTLYGCDAVD GNNFSKWCYK PYDDLIKQAK
ATSDQAKRTE LYQKAQHILK EQVPITPIAH STVYQPMSAK VKDFKISPFA LNSFYGVSVD
K
|
|---|
| |