| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0883 |
|---|
| Symbol | ispG |
|---|
| ID | 5195288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1001697 |
|---|
| End bp | 1002806 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640585342 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001266229 |
|---|
| Protein GI | 148546127 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.760901 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.748991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGGCG AATCTCCGAT CAAACGTCGC GAATCCCGCA AAATCTGGGT TGGCAATGTG
CCGGTGGGTG GTGATGCGCC CATCGCGGTG CAGAGCATGA CCAACACCGA CACCAACGAT
GTCGCTGCCA CCGTGGCGCA AATCCAGCGT CTGGTCGACG CCGGCGTGGA CATCGTGCGT
GTCTCGGTGC CGGACATGGA CGCCGCCGAA GCGTTTGGCA AGATCAAGCA ACGGGTCAGC
GTGCCGCTGG TCGCCGACAT CCATTTCGAC TACAAGATCG CCCTGCGCGT TGCCGAGCTG
GGCGTTGATT GCCTGCGGAT CAACCCGGGC AACATCGGCC GTGAAGACCG TGTGCGCGCT
GTGGTCGATG CCGCCCGCGA CCGGGGCATT CCGATTCGTA TCGGGGTCAA CGCCGGTTCG
CTGGAAAAAG ACCTGCAGAA GAAGTATGGC GAACCGACCC CGGCCGCACT GGTCGAGTCG
GCCCTGCGCC ACGTCGAGCA TCTCGACCGC CTGGATTTCC AGGACTTCAA GGTCAGCGTC
AAGGCCTCGG ACGTGTTCAT GGCTGTCGAA GCCTACCGTC TGCTGGCCAA GCAGATCGTA
CAACCGCTGC ACCTGGGCAT CACTGAAGCC GGTGGCCTGC GTTCGGGGAC GGTGAAGTCC
GCCGTCGGCC TCGGTATGCT GCTGGCCGAG GGTATTGGCG ATACCATTCG CATCTCGCTG
GCGGCCGACC CGGTCGAAGA AGTGAAAGTC GGCTACGACA TCCTCAAGTC GCTGCATCTG
CGTTCGCGTG GCATCAACTT CATTGCCTGC CCGAGCTGCT CGCGGCAGAA CTTCGATGTG
GTCAAGACCA TGAACGAGCT GGAAGGGCGT CTGGAAGACC TGCTGGTGCC GCTGGATGTG
GCGGTGATCG GTTGCGTGGT CAACGGCCCG GGTGAAGCCA AGGAGGCCCA TGTCGGCTTG
ACCGGCGGCA CGCCGAACCT GATCTACATC GACGGCAAGC CTGCGCAGAA ACTGACCAAT
GACAACCTGG TCGATGAGCT GGAAAAGCTC ATCCGCCAGA AAGCGGCCGA AAAGGCCGAA
GCTGACGCGG CGCTGATCGT CCGTGGCTGA
|
|---|
| Protein sequence | MHGESPIKRR ESRKIWVGNV PVGGDAPIAV QSMTNTDTND VAATVAQIQR LVDAGVDIVR
VSVPDMDAAE AFGKIKQRVS VPLVADIHFD YKIALRVAEL GVDCLRINPG NIGREDRVRA
VVDAARDRGI PIRIGVNAGS LEKDLQKKYG EPTPAALVES ALRHVEHLDR LDFQDFKVSV
KASDVFMAVE AYRLLAKQIV QPLHLGITEA GGLRSGTVKS AVGLGMLLAE GIGDTIRISL
AADPVEEVKV GYDILKSLHL RSRGINFIAC PSCSRQNFDV VKTMNELEGR LEDLLVPLDV
AVIGCVVNGP GEAKEAHVGL TGGTPNLIYI DGKPAQKLTN DNLVDELEKL IRQKAAEKAE
ADAALIVRG
|
|---|
| |