| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0827 |
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| Symbol | |
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| ID | 5190885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 923819 |
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| End bp | 925003 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640585286 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001266174 |
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| Protein GI | 148546072 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.72853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.590012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACC ATGAACTCCC GGCTTCCTAC CTGGACGGGC AGGACGACCA GGCGGTGTTC
CGCGCCGGCC GCATCATCAC CCTCTGCGCA CTGATGCTGG CGGCGTTCCT GGCCTGGGCG
GCCTGGTTCG AGGTGACCGA GGTGTCCACC GGCACAGGCA AGGTCATCCC AAGTTCGCGA
GAGCAGGTCA TTCAGTCGTT CGAGGGCGGT ATCGTCGCGC AGATGAGCGT GGCCGAAGGC
GACCTGGTCG AGCGCGGCCA AGTGCTGGCC CAGCTCGACC CGACCAAGAC GGCTTCCAGC
GTGGGTGAAA GCGAGGCCAA GTACCGGGCT GCCAAAGCCA GTCAGGCTCG CCTGCAGGCA
GAGGTGACCG GCAAGCCCCT GACCTTCCCG GCGAGCCTGC GCGACTCTCC TGACCTGATC
GATGCCGAAA CCGCGTTGTA CCAGACCCGC CGCCGCGGCC TGGAACAGAC CCTGGCGGGT
ATTCAGGACT CGTTGCAGCT GGTGCGCAGC GAGCTGAAGA TCACCGAGAA CCTGGCAAAG
ATGGGTGCCT CCAGCCGGGT TGAAGTGATC CGCCTGAACC GCCAGCGTTC CGAGCTGGAA
CTCAAAGCCA ACGAGGCGCG CTCAGACTAT CTGGTGCGCG CCCGGGAAGA ACTGGCCAAG
GCCAGCGCCG AAGCGGACGC CCTGTCGGAA GTGATCCGCG GACGCAGCGA CTCGCTCACC
CGCCTGACCC TGCGCTCGCC GGTGCGCGGC ATCGTGAAGG ACATCGAGGT CAACACCCTG
GGTGGCGTGG TGCAGCCCGG TGGCCAGGTG ATGAAGATCG TGCCGATGGA CGAACGCCTG
CTGATCGAAA CCCGCATCGC GCCACGGGAC ATCGCCTTCA TTCACCCCGA CCAGGCGGCC
AAGGTCAAGA TCAGTGCCTA TGACTATTCG GTCTATGGTG GGCTGGACGG CAAGGTGGTG
GGCATCTCGC CGGATACCCT GCAGGACGAG GTCAAACCGG AAATCTACTA CTACCGCGTG
TTCATCCGCA CCGAACAGGA CAGCTTGCAA AACAAGGCCG GCAAGCGTTT TGCGATCGTG
CCAGGGATGA TTGCCACGGT GGATATCCGA ACGGGCGAGA AAACCATCCT CGATTACCTG
ATCAAGCCGC TGAACCGGGC CAAGGAGGCC CTGCGCGAAC GCTGA
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| Protein sequence | MSNHELPASY LDGQDDQAVF RAGRIITLCA LMLAAFLAWA AWFEVTEVST GTGKVIPSSR
EQVIQSFEGG IVAQMSVAEG DLVERGQVLA QLDPTKTASS VGESEAKYRA AKASQARLQA
EVTGKPLTFP ASLRDSPDLI DAETALYQTR RRGLEQTLAG IQDSLQLVRS ELKITENLAK
MGASSRVEVI RLNRQRSELE LKANEARSDY LVRAREELAK ASAEADALSE VIRGRSDSLT
RLTLRSPVRG IVKDIEVNTL GGVVQPGGQV MKIVPMDERL LIETRIAPRD IAFIHPDQAA
KVKISAYDYS VYGGLDGKVV GISPDTLQDE VKPEIYYYRV FIRTEQDSLQ NKAGKRFAIV
PGMIATVDIR TGEKTILDYL IKPLNRAKEA LRER
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