| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0734 |
|---|
| Symbol | |
|---|
| ID | 5194367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 821775 |
|---|
| End bp | 822989 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640585193 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001266082 |
|---|
| Protein GI | 148545980 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.459587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCA GTAGTGCCTC CACCGCATCC ACCCCGGCAG CGGCAAGCCA AGCCTCGCCG
ATGGTGATGC GCATCATCGG TTTCTGCGCC TTGGCGCACT TGATCAACGA CCTGATCCAG
TCGGTGCTGC CGGCGATCTA CCCGATGCTC AAGGCCAACT ACGACCTGAG CTTCGCCCAG
ATCGGCATGA TCACGCTCAC GTTCCAGATC ACCGCCTCGC TGTTGCAGCC TTGGGTCGGC
TTCTTCACCG ACCGCCGGGC CACGCCAAAT CTGTTGCCGC TTGGCACCCT GTGCACGTTG
GTGGGGATCG TGATGCTGGC CTTCGTTGGC AGTTTCCCGA TGATCCTGCT GGCATCGGCG
CTGGTGGGCA TTGGCTCGTC GACCTTCCAC CCGGAAACCT CGCGTATTGC ACGGCTGGCT
TCGGGCGGGC GCTTCGGCCT GGCCCAGTCG ACCTTCCAGG TCGGTGGCAA CACCGGCTCC
GCTCTGGGCC CGCTGTTGGC AGCGGCCATC GTCATTCCGT TCGGCCAGAC CCATGTGGCC
TGGTTCGGCC TGGCCGGGCT GTTCTTCCTC GGCGTTACCC TGATGCTGCG CGGCTGGTAC
AAGGAGCACC TCAATCAGGC CAAGGCGCGC AAGGCGGTTC AGGCCACCCA CGGCATTTCG
CGCAATCGGG TAATTGCGGC GCTGATCGTG CTGGGCCTGC TGGTGTTCTC CAAGTACTTC
TACATGGCCA GCTTCACCAG CTACTTCACC TTTTACCTGA TCGAGAAGTT CGGTGTGTCG
GTGGCCAGCT CGCAGCTGCA CCTGTTCCTG TTCCTCGGCG CAGTGGCGGC GGGCACCTTC
TTTGGCGGGC CGATCGGTGA CCGTATCGGG CGCAAGGCAG TCATCTGGTT TTCAATACTG
GGCGTGGCGC CGTTCACGCT GGCGCTGCCG TATGCCGACT TGTTCTGGAC CACGGTGCTG
AGCGTGGTGA TCGGCTTTAT CCTGGCTTCT GCGTTTTCCG CGATCGTGGT GTATGCGCAG
GAACTGGTGC CGGGCAGCGT GGGCATGATT GCCGGGATCT TCTTCGGCCT GATGTTCGGC
TTTGGTGGCA TTGGCGCTGC GCTGTTGGGG TACGTAGCAG ACCTGCGTGG TATCGAGTAT
GTGTACGGCT TGTGCTCGTT CCTGCCATTG TTCGGGTTGT TGGCGGTGTT TCTGCCAAGT
ACAGGTAAAC GCTGA
|
|---|
| Protein sequence | MATSSASTAS TPAAASQASP MVMRIIGFCA LAHLINDLIQ SVLPAIYPML KANYDLSFAQ
IGMITLTFQI TASLLQPWVG FFTDRRATPN LLPLGTLCTL VGIVMLAFVG SFPMILLASA
LVGIGSSTFH PETSRIARLA SGGRFGLAQS TFQVGGNTGS ALGPLLAAAI VIPFGQTHVA
WFGLAGLFFL GVTLMLRGWY KEHLNQAKAR KAVQATHGIS RNRVIAALIV LGLLVFSKYF
YMASFTSYFT FYLIEKFGVS VASSQLHLFL FLGAVAAGTF FGGPIGDRIG RKAVIWFSIL
GVAPFTLALP YADLFWTTVL SVVIGFILAS AFSAIVVYAQ ELVPGSVGMI AGIFFGLMFG
FGGIGAALLG YVADLRGIEY VYGLCSFLPL FGLLAVFLPS TGKR
|
|---|
| |